Table of Contents
 
UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549

FORM 10-Q

 
x	QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934	
For the quarterly period ended June 30, 2013
OR
 
¨	TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934	
Commission file number 001-35547

ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
(Exact name of registrant as specified in its charter)

 
 	 	 	
Delaware	 	36-4392754	
(State or other jurisdiction of
incorporation or organization)	 	(I.R.S. Employer
Identification Number)	
222 Merchandise Mart, Suite 2024
Chicago, IL 60654
(Address of principal executive offices)
(312) 506-1200
(Registrant’s telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes   x     No   ¨
Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).
    Yes  x    No  ¨
Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer or a smaller reporting company. See definition of “accelerated filer and large accelerated filer” in Rule 12b-2 of the Exchange Act. (Check one):

Large accelerated filer	 	x	  	Accelerated filer	 	¨	
 	 	 	 	
Non-accelerated filer	 	¨  (Do not check if a smaller reporting company)	  	Smaller reporting company	 	¨	
Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).
    Yes  ¨    No  x
As of July 31, 2013, there were 178,063,213 shares of the registrant’s $0.01 par value common stock outstanding.

Table of Contents
ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
FORM 10-Q
TABLE OF CONTENTS

 	  	 	  	PAGE	 	
PART I. FINANCIAL INFORMATION	  	 	 	 	
Item 1.	  	Financial Statements (unaudited)	  	 	 	 	
 	  	Consolidated Balance Sheets as of June 30, 2013 and December 31, 2012	  	 	3	  	
 	  	Consolidated Statements of Operations for the three and six months ended June 30, 2013 and 2012	  	 	4	  	
 	  	Consolidated Statements of Comprehensive Income (Loss) for the three and six months ended June 30, 2013 and 2012	  	 	5	  	
 	  	Consolidated Statements of Cash Flows for the six months ended June 30, 2013 and 2012	  	 	6	  	
 	  	Notes to Consolidated Financial Statements	  	 	7	  	
Item 2.	  	Management’s Discussion and Analysis of Financial Condition and Results of Operations	  	 	26	  	
Item 3.	  	Quantitative and Qualitative Disclosures About Market Risk	  	 	49	  	
Item 4.	  	Controls and Procedures	  	 	49	  	
PART II. OTHER INFORMATION	  	 	50	  	
Item 1.	  	Legal Proceedings	  	 	50	  	
Item 1A.	  	Risk Factors	  	 	50	  	
Item 2.	  	Unregistered Sales of Equity Securities, Use of Proceeds and Issuer Purchases of Equity Securities	  	 	51	  	
Item 6.	  	Exhibits	  	 	51	  	
SIGNATURES	  	 	52	  	
 
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PART I. FINANCIAL INFORMATION
 
Item 1.	Financial Statements	
ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
CONSOLIDATED BALANCE SHEETS
(Unaudited)

(In thousands, except per share amounts)	  	June 30,
2013	 	 	December 31,
2012	 	
ASSETS	  	 	 	 	 	 	 	 	
Current assets:	  	 	 	 	 	 	 	 	
Cash and cash equivalents	  	$	71,984	  	 	$	103,956	  	
Accounts receivable, net of allowance of $38,671 and $37,838 at June 30, 2013 and December 31, 2012, respectively	  	 	346,417	  	 	 	337,024	  	
Deferred taxes, net	  	 	55,508	  	 	 	56,499	  	
Prepaid expenses and other current assets	  	 	120,102	  	 	 	110,023	  	
 	  	 	 	 	 	 	 	 	
Total current assets	  	 	594,011	  	 	 	607,502	  	
Long-term marketable securities	  	 	1,341	  	 	 	1,706	  	
Fixed assets, net	  	 	170,950	  	 	 	155,494	  	
Software development costs, net	  	 	90,521	  	 	 	95,579	  	
Intangible assets, net	  	 	488,184	  	 	 	426,986	  	
Goodwill	  	 	1,189,585	  	 	 	1,039,364	  	
Deferred taxes, net	  	 	7,529	  	 	 	7,529	  	
Other assets	  	 	133,824	  	 	 	50,304	  	
 	  	 	 	 	 	 	 	 	
Total assets	  	$	2,675,945	  	 	$	2,384,464	  	
 	  	 	 	 	 	 	 	 	
LIABILITIES AND STOCKHOLDERS’ EQUITY	  	 	 	 	 	 	 	 	
Current liabilities:	  	 	 	 	 	 	 	 	
Accounts payable	  	$	64,047	  	 	$	45,874	  	
Accrued expenses	  	 	89,225	  	 	 	93,100	  	
Accrued compensation and benefits	  	 	47,503	  	 	 	44,124	  	
Deferred revenue	  	 	327,363	  	 	 	290,653	  	
Current maturities of long-term debt and capital lease obligations	  	 	10,736	  	 	 	79,305	  	
 	  	 	 	 	 	 	 	 	
Total current liabilities	  	 	538,874	  	 	 	553,056	  	
Long-term debt	  	 	533,451	  	 	 	362,697	  	
Deferred revenue	  	 	26,021	  	 	 	19,750	  	
Deferred taxes, net	  	 	95,973	  	 	 	125,913	  	
Other liabilities	  	 	114,046	  	 	 	38,707	  	
 	  	 	 	 	 	 	 	 	
Total liabilities	  	 	1,308,365	  	 	 	1,100,123	  	
Commitments and contingencies	  	 	 	 	 	 	 	 	
Stockholders’ equity:	  	 	 	 	 	 	 	 	
Preferred stock: $0.01 par value, 1,000 shares authorized, no shares issued and outstanding at June 30, 2013 and December 31, 2012	  	 	0	  	 	 	0	  	
Common stock: $0.01 par value, 349,000 shares authorized at June 30, 2013 and December 31, 2012; 262,629 and 177,957 shares issued and outstanding at June 30, 2013, respectively, 257,087 and 172,415 shares issued and outstanding at December 31, 2012, respectively	  	 	2,626	  	 	 	2,571	  	
Treasury stock: at cost, 84,672 shares at June 30, 2013 and December 31, 2012	  	 	(278,036	) 	 	 	(278,036	) 	
Additional paid-in capital	  	 	1,696,980	  	 	 	1,577,260	  	
Accumulated deficit	  	 	(51,998	) 	 	 	(17,530	) 	
Accumulated other comprehensive (loss) income	  	 	(1,992	) 	 	 	76	  	
 	  	 	 	 	 	 	 	 	
Total stockholders’ equity	  	 	1,367,580	  	 	 	1,284,341	  	
 	  	 	 	 	 	 	 	 	
Total liabilities and stockholders’ equity	  	$	2,675,945	  	 	$	2,384,464	  	
 	  	 	 	 	 	 	 	 	
The accompanying notes are an integral part of these consolidated financial statements.
 
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ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
CONSOLIDATED STATEMENTS OF OPERATIONS
(Unaudited)

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(In thousands, except per share amounts)	  	2013	 	 	2012	 	 	2013	 	 	2012	 	
Revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
System sales	  	$	32,449	  	 	$	43,716	  	 	$	59,480	  	 	$	80,956	  	
Professional services	  	 	59,206	  	 	 	67,380	  	 	 	120,290	  	 	 	138,866	  	
Maintenance	  	 	116,204	  	 	 	116,748	  	 	 	233,912	  	 	 	235,032	  	
Transaction processing and other	  	 	136,968	  	 	 	142,112	  	 	 	278,211	  	 	 	279,814	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total revenue	  	 	344,827	  	 	 	369,956	  	 	 	691,893	  	 	 	734,668	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Cost of revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
System sales (excluding amortization of software development costs and acquisition-related assets shown below)	  	 	13,080	  	 	 	19,124	  	 	 	26,409	  	 	 	35,760	  	
Amortization of software development costs and acquisition-related costs	  	 	19,991	  	 	 	15,939	  	 	 	39,530	  	 	 	30,888	  	
Professional services	  	 	57,401	  	 	 	57,024	  	 	 	114,983	  	 	 	118,726	  	
Maintenance	  	 	35,426	  	 	 	36,282	  	 	 	72,023	  	 	 	72,286	  	
Transaction processing and other	  	 	82,647	  	 	 	84,097	  	 	 	168,238	  	 	 	163,841	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total cost of revenue	  	 	208,545	  	 	 	212,466	  	 	 	421,183	  	 	 	421,501	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Gross profit	  	 	136,282	  	 	 	157,490	  	 	 	270,710	  	 	 	313,167	  	
Selling, general and administrative expenses	  	 	104,402	  	 	 	92,291	  	 	 	208,634	  	 	 	189,608	  	
Research and development	  	 	51,822	  	 	 	38,240	  	 	 	102,800	  	 	 	74,362	  	
Amortization of intangible and acquisition-related assets	  	 	8,379	  	 	 	9,255	  	 	 	15,880	  	 	 	18,510	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) income from operations	  	 	(28,321	) 	 	 	17,704	  	 	 	(56,604	) 	 	 	30,687	  	
Interest expense	  	 	(9,499	) 	 	 	(4,358	) 	 	 	(14,136	) 	 	 	(8,212	) 	
Interest income and other, net	  	 	218	  	 	 	150	  	 	 	8,349	  	 	 	542	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) income before income taxes	  	 	(37,602	) 	 	 	13,496	  	 	 	(62,391	) 	 	 	23,017	  	
Benefit (provision) for income taxes	  	 	14,726	  	 	 	(5,515	) 	 	 	27,923	  	 	 	(9,223	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Net (loss) income	  	($	22,876	) 	 	$	7,981	  	 	($	34,468	) 	 	$	13,794	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) earnings per share—basic and diluted	  	($	0.13	) 	 	$	0.04	  	 	($	0.20	) 	 	$	0.07	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
The accompanying notes are an integral part of these consolidated financial statements.
 
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ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
CONSOLIDATED STATEMENTS OF COMPREHENSIVE INCOME (LOSS)
(Unaudited)

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	2013	 	 	2012	 	
Net (loss) income	  	($	22,876	) 	 	$	7,981	  	 	($	34,468	) 	 	$	13,794	  	
Other comprehensive (loss) income:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Unrealized (loss) gain on marketable securities, net of tax	  	 	(20	) 	 	 	(1	) 	 	 	(16	) 	 	 	4	  	
Derivatives:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Unrealized loss on derivative financial instruments	  	 	(27	) 	 	 	(368	) 	 	 	(33	) 	 	 	(1,111	) 	
Reclassification adjustment for loss included in net (loss) income	  	 	323	  	 	 	469	  	 	 	682	  	 	 	944	  	
Tax effect	  	 	(116	) 	 	 	(40	) 	 	 	(252	) 	 	 	66	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Unrealized gain (loss) on derivative financial instruments, net of tax	  	 	180	  	 	 	61	  	 	 	397	  	 	 	(101	) 	
Change in foreign currency translation adjustments	  	 	(1,710	) 	 	 	(1,034	) 	 	 	(2,449	) 	 	 	(127	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total other comprehensive (loss) income	  	 	(1,550	) 	 	 	(974	) 	 	 	(2,068	) 	 	 	(224	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Comprehensive (loss) income	  	($	24,426	) 	 	$	7,007	  	 	($	36,536	) 	 	$	13,570	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
The accompanying notes are an integral part of these consolidated financial statements.
 
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ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
CONSOLIDATED STATEMENTS OF CASH FLOWS
(Unaudited)

 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	
Cash flows from operating activities:	  	 	 	 	 	 	 	 	
Net (loss) income	  	($	34,468	) 	 	$	13,794	  	
Adjustments to reconcile net (loss) income to net cash provided by operating activities:	  	 	 	 	 	 	 	 	
Depreciation and amortization	  	 	84,965	  	 	 	72,885	  	
Stock-based compensation expense	  	 	18,110	  	 	 	17,656	  	
Excess tax benefits from stock-based compensation	  	 	(2,493	) 	 	 	(101	) 	
Deferred taxes	  	 	(28,639	) 	 	 	7,052	  	
Other losses, net	  	 	(24	) 	 	 	1,130	  	
Changes in operating assets and liabilities, net of business combinations:	  	 	 	 	 	 	 	 	
Accounts receivable, net	  	 	(5,905	) 	 	 	(146	) 	
Prepaid expenses and other assets	  	 	(21,706	) 	 	 	(8,576	) 	
Accounts payable	  	 	21,103	  	 	 	15,997	  	
Accrued expenses	  	 	(12,330	) 	 	 	(3,657	) 	
Accrued compensation and benefits	  	 	929	  	 	 	(3,669	) 	
Deferred revenue	  	 	36,605	  	 	 	20,481	  	
Other liabilities	  	 	(5,351	) 	 	 	594	  	
 	  	 	 	 	 	 	 	 	
Net cash provided by operating activities	  	 	50,796	  	 	 	133,440	  	
Cash flows from investing activities:	  	 	 	 	 	 	 	 	
Capital expenditures	  	 	(45,650	) 	 	 	(38,732	) 	
Capitalized software	  	 	(19,516	) 	 	 	(26,936	) 	
Cash paid for business acquisitions, net of cash acquired	  	 	(148,875	) 	 	 	0	  	
Sales and maturities of other investments	  	 	12,844	  	 	 	41	  	
 	  	 	 	 	 	 	 	 	
Net cash used in investing activities	  	 	(201,197	) 	 	 	(65,627	) 	
Cash flows from financing activities:	  	 	 	 	 	 	 	 	
Proceeds from issuance 1.25% senior cash convertible notes, net of issuance costs	  	 	337,237	  	 	 	0	  	
Purchase of call option related to 1.25% senior cash convertible notes	  	 	(82,800	) 	 	 	0	  	
Proceeds from issuance of warrants	  	 	51,233	  	 	 	0	  	
Proceeds from issuance of common stock	  	 	9,264	  	 	 	3,862	  	
Excess tax benefits from stock-based compensation	  	 	2,493	  	 	 	101	  	
Taxes paid related to net share settlement of equity awards	  	 	(6,660	) 	 	 	(3,621	) 	
Payments of capital lease obligations	  	 	(300	) 	 	 	(431	) 	
Payments of acquisition financing obligations	  	 	(29,671	) 	 	 	0	  	
Credit facility payments	  	 	(571,467	) 	 	 	(204,045	) 	
Credit facility borrowings, net of issuance costs	  	 	410,983	  	 	 	324,185	  	
Repurchase of common stock	  	 	0	  	 	 	(225,961	) 	
 	  	 	 	 	 	 	 	 	
Net cash provided by (used in) financing activities	  	 	120,312	  	 	 	(105,910	) 	
 	  	 	 	 	 	 	 	 	
Effect of exchange rate changes on cash and cash equivalents	  	 	(1,883	) 	 	 	717	  	
 	  	 	 	 	 	 	 	 	
Net (decrease) increase in cash and cash equivalents	  	 	(31,972	) 	 	 	(37,380	) 	
Cash and cash equivalents, beginning of period	  	 	103,956	  	 	 	157,753	  	
 	  	 	 	 	 	 	 	 	
Cash and cash equivalents, end of period	  	$	71,984	  	 	$	120,373	  	
 	  	 	 	 	 	 	 	 	
The accompanying notes are an integral part of these consolidated financial statements.
 
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ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
(Unaudited)
1. Summary of Significant Accounting Policies
Principles of Consolidation
The consolidated financial statements include the accounts of Allscripts Healthcare Solutions, Inc. and our wholly-owned subsidiaries. All significant intercompany balances and transactions have been eliminated.
Certain prior period revenue amounts in system sales have been reclassified to maintenance revenue to conform to the current period presentation. The amount reclassified for each period is as follows:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	  	2012	 	  	2013	 	  	2012	 	
Revenue reclassifications from system sales to maintenance	  	$	0	  	  	$	2,849	  	  	$	0	  	  	$	6,317	  	
Unaudited Interim Financial Information
The unaudited interim consolidated financial statements as of and for the three and six months ended June 30, 2013 have been prepared in accordance with the rules and regulations of the Securities and Exchange Commission (the “SEC”) for interim financial reporting. These consolidated financial statements are unaudited and, in the opinion of management, include all adjustments, consisting of normal recurring adjustments and accruals, necessary to present fairly the consolidated financial statements for the periods presented in accordance with generally accepted accounting principles in the United States of America (“GAAP”). The results of operations for the three and six months ended June 30, 2013 are not necessarily indicative of the results to be expected for the year ending December 31, 2013.
Certain information and footnote disclosures normally included in annual financial statements prepared in accordance with GAAP have been omitted in accordance with the SEC’s rules and regulations for interim reporting. These unaudited interim consolidated financial statements should be read in conjunction with the consolidated financial statements and related notes included in our Annual Report on Form 10-K/A for the year ended December 31, 2012.
Use of Estimates
The preparation of consolidated financial statements in conformity with GAAP requires us to make estimates and assumptions that affect the amounts reported and disclosed in the financial statements and the accompanying notes. Actual results could differ materially from these estimates.
Significant Accounting Policies
There have been no changes to our significant accounting policies from those disclosed in our Annual Report on Form 10-K/A for the year ended December 31, 2012.
Business Combinations
Goodwill as of the acquisition date is measured as the excess of consideration transferred over the net of the acquisition date fair values of the assets acquired and the liabilities assumed. While we use our best estimates and assumptions as a part of the purchase price allocation process to accurately value assets acquired, including intangible assets, and liabilities assumed at the acquisition date, our estimates are inherently uncertain and subject to refinement. As a result, during the measurement period, which may be up to one year from the acquisition date, we may record adjustments to the assets acquired and liabilities assumed, with the corresponding offset to goodwill. Upon the conclusion of the measurement period or final determination of the values of assets acquired or liabilities assumed, whichever comes first, any subsequent adjustments are recorded to our consolidated statements of operations.
Goodwill and Intangible Assets
Goodwill and intangible assets acquired in a business combination and determined to have an indefinite useful life are not amortized in accordance with accounting guidance, but accounting guidance requires that we perform an impairment test at least annually. The goodwill impairment analysis is comprised of two steps. In step one the estimated fair value of a reporting unit is compared to its carrying value. Step two is required only if there is a deficiency (the estimated fair value is less than the carrying value). In step two the actual amount of the goodwill impairment is calculated by comparing the implied fair value of the reporting unit’s goodwill with the carrying amount of that goodwill. The implied fair value is determined in the same manner as the amount of goodwill recognized in a business combination. If the carrying value of a reporting unit’s goodwill exceeds its implied fair value, then an impairment loss equal to the difference would be recorded. The recoverability of indefinite lived intangible assets is assessed by comparison of the carrying value of the asset to its estimated fair value. If we determine that the carrying value of the asset exceeds its estimated fair value, an impairment loss would be recorded equal to the excess. We perform our annual test for impairment of goodwill and indefinite lived intangible assets as of the first day of our fiscal fourth quarter. We do not test our goodwill and indefinite lived intangible assets for impairment at any other time unless specific circumstances indicate there is a possibility that impairment has occurred. Accordingly, we did not perform any tests for impairment during the three and six months ended June 30, 2013.
 
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Accounting guidance also requires that intangible assets with estimable useful lives be amortized over their respective estimated useful lives and reviewed for impairment. We estimate the useful lives of our intangible assets and ratably amortize the value over the remaining estimated economic lives of those assets, including the period being reported on. If the actual useful life is shorter than our estimated useful life, we will amortize the remaining book value over the remaining useful life or the asset may be deemed to be impaired and, accordingly, a write-down of the value of the asset may be required.
Recent Accounting Pronouncements
In February 2013, the Financial Accounting Standards Board (“FASB”) issued updated authoritative guidance regarding the presentation requirements for reclassifications out of accumulated other comprehensive income. This guidance requires an entity to provide information about the amounts reclassified out of accumulated other comprehensive income by component. In addition, an entity is required to present, either on the face of the statement where net income is presented or in the notes, significant amounts reclassified out of accumulated other comprehensive income by the respective line items of net income but only if the amount reclassified is required under U.S. GAAP to be reclassified to net income in its entirety in the same reporting period. For other amounts that are not required under U.S. GAAP to be reclassified in their entirety to net income, an entity is required to cross-reference to other disclosures required under U.S. GAAP that provide additional detail about those amounts. This guidance is effective prospectively for reporting periods beginning after December 15, 2012. This guidance will not have a material impact on the consolidated financial statements.
In March 2013, the FASB issued updated authoritative guidance to resolve the diversity in practice about whether FASB Account Standards Codification (ASC) Subtopic 810-10, Consolidation—Overall, or ASC Subtopic 830-30, Foreign Currency Matters—Translation of Financial Statements, applies to the release of the cumulative translation adjustment into net income when a parent either sells a part or all of its investment in a foreign entity or no longer holds a controlling financial interest in a subsidiary or group of assets that is a nonprofit activity or a business (other than a sale of in substance real estate or conveyance of oil and gas mineral rights) within a foreign entity. In addition, this guidance resolves the diversity in practice for the treatment of business combinations achieved in stages (sometimes also referred to as step acquisitions) involving a foreign entity. This guidance is effective prospectively for fiscal years (and interim reporting periods within those years) beginning after December 15, 2013. This guidance is not expected to have a material impact on the consolidated financial statements.
 
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2. Business Combinations
To better deliver comprehensive care coordination and population health management across hospitals, physician practices, and home care systems, in the first fiscal quarter of 2013 we acquired dbMotion, Ltd. (dbMotion), a leading supplier of community health solutions, and we acquired the assets of Jardogs LLC (Jardogs), a top-rated patient engagement solution provider, both privately held. These acquisitions advance our strategy to offer full integration of heterogeneous systems across the care continuum, enabling solutions for a Connected Community of Health™. dbMotion provides a strategic platform for care coordination and population health management that integrates discrete patient data from diverse care settings, regardless of IT supplier, into a single patient record. The Jardogs FollowMyHealth™ patient engagement platform enables patients to actively participate in their care, critical for at-risk populations, and empowers consumers with the solution they need to monitor and optimize health status.
Acquisition of dbMotion, Ltd.
On March 4, 2013, we acquired all of the issued and outstanding share capital of dbMotion, a privately-held Israeli Company, for aggregate consideration with a fair value of approximately $225 million, subject to adjustment for certain provisional items as noted below. Immediately prior to the closing, we owned approximately 4.25% of the issued and outstanding share capital of dbMotion on a fully diluted basis. In addition, prior to the acquisition we had an ongoing strategic relationship with dbMotion in connection with the development and sale of software solutions to hospitals, physicians and other participants in the healthcare industry.
Under the acquisition method of accounting, the fair value of consideration transferred was allocated to the tangible and intangible assets acquired and liabilities assumed based on their estimated fair values as of the acquisition date with the remaining unallocated amount recorded as goodwill.
The results of dbMotion are included in the accompanying consolidated statements of operations from the date of the acquisition, March 4, 2013.
The total fair value of consideration transferred for the acquisition is comprised of the following:

(Dollar amounts in thousands, except per share amounts)	  	 	 	
Cash	  	$	139,061	  	
Allscripts common stock, 3,823,453 shares, par value $0.01 per share, fair value at closing $12.57 per share	  	 	48,061	  	
Deferred cash consideration payable on the 18-month anniversary of the closing	  	 	23,023	  	
Subordinated promissory note maturing 18 months following the closing	  	 	6,648	  	
Fair value of Allscripts’ previous interest in dbMotion	  	 	8,367	  	
 	  	 	 	 	
Total fair value of consideration transferred	  	$	225,160	  	
 	  	 	 	 	
On March 5, 2013, we borrowed $130 million to fund the cash component of the consideration under our senior secured revolving credit facility. On June 28, 2013, the liability for the deferred cash consideration payable was funded by placing the funds with an escrow agent, and the subordinated promissory note was paid off. Both the deferred cash consideration and subordinated promissory note had accrued interest at a 10% annual rate. These transactions were funded using proceeds from the initial draw down on our new revolving credit facility (Note 7).
The carrying value of our 4.25% interest in dbMotion prior to the acquisition was $5 million, accounted for using the cost method. In connection with the acquisition, this investment was remeasured to a fair value of approximately $8.4 million resulting in a gain of approximately $3.4 million which is included in interest income and other, net, in the accompanying consolidated statement of operations for the six months ended June 30, 2013. The remeasured fair value of our prior interest in dbMotion was estimated based on the fair value of consideration transferred to acquire the remaining 95.75% of the company, less an estimated control premium of 15%. The inputs into this fair value estimate reflect our market assumptions based on premiums observed in similar transactions within our industry.
The preliminary allocation of the fair value of the consideration transferred was based upon a preliminary valuation. Our estimates and assumptions are subject to change as we obtain additional information for our estimates during the measurement period (up to one year from the acquisition date). The primary area of the preliminary allocation of the fair value of consideration transferred that are not yet finalized relates to the fair value of the total consideration transferred and therefore may result in an additional increase in the residual value allocated to goodwill of up to $1 million before the close of the measurement period. During the six months ended June 30, 2013, measurement period adjustments, including approximately $1 million to increase deferred cash consideration, $1.2 million to reduce the fair value of prepaid expenses and other current assets, $1.3 million to reduce the fair value of other long-term assets, $0.5 million to reduce the fair value of other accrued liabilities, and other minor adjustments to acquired cash and net deferred tax liabilities, combined to result in an increase of approximately $3.2 million in the residual allocation to goodwill. The preliminary allocation of the fair value of the consideration transferred, including measurement period adjustments through June 30, 2013, is as follows:
 
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(In thousands)	  	 	 	
Acquired cash and cash equivalents, and restricted cash	  	$	14,188	  	
Accounts receivable, net	  	 	3,226	  	
Prepaid expenses and other current assets	  	 	574	  	
Fixed assets and other long-term assets	  	 	1,449	  	
Goodwill	  	 	136,631	  	
Intangible assets	  	 	85,450	  	
Accounts payable and accrued liabilities	  	 	(10,560	) 	
Deferred taxes, net	  	 	(36	) 	
Deferred revenue	  	 	(5,100	) 	
Other liabilities	  	 	(662	) 	
 	  	 	 	 	
Net assets acquired	  	$	225,160	  	
 	  	 	 	 	
Goodwill was determined based on the residual difference between the fair value of the consideration transferred and the value assigned to tangible and intangible assets and liabilities, and is not deductible for tax purposes. Among the factors that contributed to a purchase price resulting in the recognition of goodwill were the expected synergies that we believe will result from the integration of dbMotion’s product offerings with those of Allscripts.
Acquisition and integration-related costs related to the dbMotion acquisition are included in selling, general and administrative expenses and totaled approximately $5.6 million and $7.0 million for the three and six months ended June 30, 2013, respectively. Included in these costs are seller transaction costs of $0.5 million during the six months ended June 30, 2013, employee compensation of approximately $1.9 million and $2.4 million for the three and six months ended June 30, 2013, respectively, and $2.8 million for the three and six months ended June 30, 2013 related to product consolidation activities. Additional employee compensation of approximately $5.6 million related to the dbMotion acquisition is expected to be incurred during the next nine to fifteen months following the second quarter of fiscal 2013.
The acquired intangible assets are being amortized on a straight-line basis over their useful lives and consist of the following amounts for each class of acquired intangible asset representing a provisional allocation of the fair value of consideration transferred subject to future adjustment pending the completion of our acquisition accounting as noted above:

(Dollar amounts in thousands)
Description	  	Useful Life
in Years	  	Fair Value	 	
Core technology	  	10	  	$	80,100	  	
Maintenance agreements	  	12	  	 	2,500	  	
Services backlog	  	2	  	 	2,000	  	
Non-compete	  	3	  	 	500	  	
Trade name	  	2	  	 	350	  	
 	  	 	  	 	 	 	
 	  	 	  	$	85,450	  	
 	  	 	  	 	 	 	
The revenue and net loss of dbMotion since March 4, 2013 that are included in our consolidated statement of operations for the three and six months ended June 30, 2013, and the supplemental pro forma revenue and net loss of the combined entity, presented as if the acquisition of dbMotion had occurred on January 1, 2012, are as follows:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	  	2013	 	 	2012	 	
Actual from dbMotion since acquisition date of March 4, 2013:	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Revenue	  	$	554	  	 	$	0	  	  	$	728	  	 	$	0	  	
Net loss	  	($	8,693	) 	 	$	0	  	  	($	11,540	) 	 	$	0	  	
Supplemental pro forma data for combined entity:	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Revenue	  	$	346,162	  	 	$	369,971	  	  	$	694,422	  	 	$	735,042	  	
Net loss	  	($	19,619	) 	 	$	3,681	  	  	($	42,633	) 	 	($	74	) 	
Net loss per share, basic and diluted	  	($	0.11	) 	 	$	0.02	  	  	($	0.24	) 	 	($	0.00	) 	
The supplemental pro forma data has been calculated after applying our accounting policies and adjusting the results of dbMotion to reflect the additional depreciation and amortization that would have been charged assuming the fair value adjustments to property, plant and equipment and intangible assets had been applied on January 1, 2012, together with the consequential tax effects. Supplemental pro forma earnings for the three and six months ended June 30, 2013 were adjusted to exclude acquisition-related costs incurred during the period as well as the nonrecurring gain related to the fair value adjustment of our prior cost method investment in dbMotion. Supplemental pro forma earnings for the three and six months ended June 30, 2012 were adjusted to include these items. The effects of transactions between Allscripts and dbMotion during the periods presented have been eliminated.
 
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Amortization of software development costs and acquisition-related assets in our consolidated statement of operations for the three and six months ended June 30, 2013 includes approximately $0.6 million and $1.8 million, respectively, related to the acquisition of dbMotion, which is attributable to cost of revenue as follows: approximately $0.3 million and $0.7 million, respectively, related to system sales, approximately ($0.5) million and $0.1 million, respectively, related to professional services, and approximately $0.8 million and $1.0 million, respectively, related to maintenance.
Acquisition of Jardogs LLC
Also on March 4, 2013, we acquired substantially all of the assets of Jardogs LLC (Jardogs) for $24 million in cash. The allocation of the fair value of the consideration transferred is as follows: approximately $4 million of intangible assets related to technology, including Jardogs’ portal software, $2 million of intangible assets related to customer relationships, net deferred tax assets of approximately $0.5 million, and goodwill of approximately $17 million. Goodwill was determined based on the residual difference between the fair value of the consideration transferred and the value assigned to tangible and intangible assets and liabilities, and is deductible for tax purposes. Among the factors that contributed to a purchase price resulting in the recognition of goodwill were the expected synergies that we believe will result from the integration of Jardogs’ product offerings with those of Allscripts. The acquired intangible assets, excluding goodwill, have estimated lives of 10 years and are being amortized on a straight-line basis.
The pro forma impact of the Jardogs acquisition on current and prior periods, as well as the net revenues and operating losses generated by Jardogs subsequent to its acquisition for the three and six months ended June 30, 2013, are not material.
Acquisition and integration-related costs related to the Jardogs acquisition are included in selling, general and administrative expenses and totaled approximately $0.1 million and $0.7 million for the three and six months ended June 30, 2013.
 
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3. Fair Value Measurements
The fair values of assets and liabilities required to be measured at fair value are categorized based upon the level of judgment associated with the inputs used to measure their value. Hierarchical levels are as follows:
Level 1: Inputs are unadjusted quoted prices in active markets for identical assets or liabilities at the measurement date. Our Level 1 investments include money market funds valued daily by the fund companies, and the valuation is based on the publicly reported net asset value of each fund.
Level 2: Inputs, other than quoted prices included in Level 1, are observable for the asset or liability, either directly or indirectly. Level 2 inputs include quoted prices for similar instruments in active markets, and inputs other than quoted prices that are observable for the asset or liability. Our Level 2 non-derivative investments include marketable securities and consist of mortgage and asset-backed bonds. Marketable securities are recorded at fair value determined using a market approach, based on prices and other relevant information generated by market transactions involving identical or comparable assets which are considered to be Level 2 inputs. Our Level 2 derivative financial instrument represents an interest rate swap contract which is valued based upon observable values for underlying interest rates and market determined risk premiums.
Level 3: Inputs are unobservable for the asset or liability, and include situations where there is little, if any, market activity for the asset or liability. Our Level 3 financial instruments include derivative financial instruments comprising the 1.25% Call Option asset and the embedded conversion option liability. See Note 7, “Debt,” and Note 9, “Derivative Financial Instruments,” for further information, including defined terms, regarding our derivative financial instruments. These derivatives are not actively traded and are valued based on an option pricing model that uses observable and unobservable market data for inputs. Significant market data inputs used to determine fair value as of June 30, 2013 included our common stock price, time to maturity of the derivative instruments, the risk-free interest rate, and the implied volatility of our common stock. The 1.25% Call Option asset and the embedded cash conversion option liability were designed with the intent that changes in their fair values would offset, with minimal impact to the consolidated statements of operations. Therefore, the sensitivity of changes in the unobservable inputs to the option pricing model for such instruments is mitigated.
The following table summarizes our financial assets and liabilities measured at fair value on a recurring basis as of the respective balance sheet dates:

 	  	Balance Sheet
Classifications	  	June 30, 2013	 	 	December 31, 2012	 	 	
(In thousands)	  	 	  	Level 1	 	  	Level 2	 	 	Level 3	 	 	Total	 	 	Level 1	 	  	Level 2	 	 	Level 3	 	  	Total	 	 	
Money market funds	  	Cash equivalents	  	$	3,802	  	  	$	0	  	 	$	0	  	 	$	3,802	  	 	$	14,653	  	  	$	0	  	 	$	0	  	  	$	14,653	  	 	
Marketable securities	  	Long-term marketable securities	  	 	0	  	  	 	1,341	  	 	 	0	  	 	 	1,341	  	 	 	0	  	  	 	1,706	  	 	 	0	  	  	 	1,706	  	 	
1.25%Call Option	  	Other assets	  	 	0	  	  	 	0	  	 	 	81,074	  	 	 	81,074	  	 	 	0	  	  	 	0	  	 	 	0	  	  	 	0	  	 	
Cash conversion option	  	Other liabilities	  	 	0	  	  	 	0	  	 	 	(81,074	) 	 	 	(81,074	) 	 	 	0	  	  	 	0	  	 	 	0	  	  	 	0	  	 	
Interest rate swap	  	Other liabilities	  	 	0	  	  	 	(885	) 	 	 	0	  	 	 	(885	) 	 	 	0	  	  	 	(1,534	) 	 	 	0	  	  	 	(1,534	) 	 	
 	  	 	  	 	 	 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	 	
Total	  	 	  	$	3,802	  	  	$	456	  	 	$	0	  	 	$	4,258	  	 	$	14,653	  	  	$	172	  	 	$	0	  	  	$	14,825	  	 	
 	  	 	  	 	 	 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	 	
At December 31, 2012 we held investments in certain non-marketable equity securities in which we did not have a controlling interest or significant influence. These investments were recorded at cost with a carrying value of $13 million at December 31, 2012 and were included in other assets in the accompanying consolidated balance sheets. During the first fiscal quarter of 2013, one of these investments, Humedica, was sold for cash proceeds of approximately $12.5 million, plus an additional $2 million held in escrow, resulting in a gain of approximately $4.7 million which is included in interest income and other, net, in the accompanying consolidated statement of operations for the six months ended June 30, 2013. The $2 million escrow receivable has been included in our consolidated balance sheet as $0.7 million included in prepaid expenses and other current assets and $1.3 million in other assets and has been recorded at its estimated fair value based upon our estimate of its present value and collectability. The inputs into this fair value estimate reflect our market assumptions and are not observable. Consequently, the inputs are considered to be Level 3 as specified in the fair value hierarchy. The other significant investment in non-marketable equity securities consisted of our 4.25% equity interest in dbMotion. On March 4, 2013, we acquired the entire remaining interest in dbMotion, which is now consolidated in our financial statements. Refer to Note 2, Business Combinations, for additional information regarding the acquisition of dbMotion. The carrying value of our interest in dbMotion prior to the acquisition was $5 million. In connection with the acquisition, this investment was remeasured to a fair value of approximately $8.4 million, resulting in a gain of approximately $3.4 million which is included in interest income and other, net, in the accompanying consolidated statement of operations for the six months ended June 30, 2013. At June 30, 2013, our remaining investment in non-marketable equity securities is not material.
Our long-term financial liabilities include amounts outstanding under our senior secured credit facilities with carrying values that approximate fair value since the interest rates approximate current market rates. In addition, the carrying amount of our 1.25% cash convertible notes also approximates fair value at June 30, 2013 since the effective interest rate on the notes approximates current market rates. See Note 7, “Debt,” for further information regarding our long-term financial liabilities.
 
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4. Stockholders’ Equity
Stock-based Awards
We measure stock-based compensation cost at the grant date based on the fair value of the award and recognize the expense over the appropriate service period typically on a straight-line basis, net of estimated forfeitures. The fair value of service-based restricted stock units and restricted stock awards is measured at their underlying closing share price on the date of grant. The fair value of market-based restricted stock units is measured using the Monte Carlo pricing model. The fair value of stock options granted during the three and six months ended June 30, 2013 was determined using the Black-Scholes-Merton valuation model and reflects the following input assumptions:

 	 	Three Months Ended June 30, 2013	 	 	Six Months Ended June 30, 2013	 	
Weighted average exercise price	 	$	14.00	  	 	$	13.70	  	
Risk-free interest rate	 	 	0.80	% 	 	 	0.81	% 	
Dividend yield	 	 	0	% 	 	 	0	% 	
Volatility	 	 	55.45	% 	 	 	55.56	% 	
Expected life (years)	 	 	4.75	  	 	 	4.75	  	
Stock-based compensation expense recognized during the three and six months ended June 30, 2013 and 2012 is included in our consolidated statements of operations as follows:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	  	2012	 	  	2013	 	  	2012	 	
Cost of revenue:	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Professional services	  	$	740	  	  	$	682	  	  	$	1,317	  	  	$	1,149	  	
Maintenance	  	 	422	  	  	 	449	  	  	 	803	  	  	 	698	  	
Transaction processing and other	  	 	475	  	  	 	555	  	  	 	899	  	  	 	848	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Total cost of revenue	  	 	1,637	  	  	 	1,686	  	  	 	3,019	  	  	 	2,695	  	
Selling, general and administrative expenses	  	 	6,086	  	  	 	6,089	  	  	 	10,812	  	  	 	11,368	  	
Research and development	  	 	2,383	  	  	 	2,154	  	  	 	4,279	  	  	 	3,593	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Total stock-based compensation expense	  	$	10,106	  	  	$	9,929	  	  	$	18,110	  	  	$	17,656	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
No stock-based compensation costs were capitalized during the three and six months ended June 30, 2013 and 2012.
We granted stock-based awards as follows:

 	  	Three Months Ended June 30, 2013	 	  	Six Months Ended June 30, 2013	 	
 	  	 	 	  	Weighted-Average	 	  	 	 	  	Weighted-Average	 	
 	  	 	 	  	Grant Date	 	  	 	 	  	Grant Date	 	
(In thousands, except per share amounts)	  	Shares	 	  	Fair Value	 	  	Shares	 	  	Fair Value	 	
Stock options	  	 	2,770	  	  	$	6.51	  	  	 	3,619	  	  	$	6.38	  	
Service-based restricted stock units	  	 	1,555	  	  	$	14.01	  	  	 	1,607	  	  	$	13.96	  	
Performance-based restricted stock units with a service condition	  	 	0	  	  	$	0.00	  	  	 	196	  	  	$	12.72	  	
Market-based restricted stock units with a service condition	  	 	36	  	  	$	18.08	  	  	 	516	  	  	$	18.08	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
 	  	 	4,361	  	  	$	9.28	  	  	 	5,938	  	  	$	9.66	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
During the six months ended June 30, 2013 and the year ended December 31, 2012, approximately 2.4 million and 3.3 million shares of stock, respectively, were issued in connection with the exercise of options and the release of restrictions on stock awards.
Stock Repurchases
In April 2011, our Board of Directors approved a stock repurchase program under which we may purchase up to $200 million of our common stock over three years expiring on May 9, 2014 or such earlier time that the total dollar amount authorized by these resolutions has been used. In April 2012, our Board of Directors approved the repurchase of an additional $200 million bringing the total repurchase authorization to $400 million. Any share repurchases may be made through open market transactions, block trades, privately negotiated transactions (including accelerated share repurchase transactions) or other means. Any repurchase activity will depend on factors such as our working capital needs, cash requirements for investments, debt repayment obligations, our stock price, and economic and market conditions. Our stock repurchase program may be accelerated, suspended, delayed or discontinued at any time.
 
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During the three and six months ended June 30, 2013, there were no shares repurchased pursuant to this stock repurchase program. During the three and six months ended June 30, 2012, we repurchased approximately 20.7 million shares of our common stock for approximately $226 million pursuant to this program. As of June 30, 2013, the amount available for repurchase of common stock under this program was approximately $123 million.
Net Share-settlements
Upon vesting, restricted stock units and awards are generally net share-settled to cover the required withholding tax and the remaining amount is converted into an equivalent number of shares of common stock. The majority of restricted stock units and awards that have vested in 2013 and 2012 were net-share settled such that we withheld shares with value equivalent to the employees’ minimum statutory obligation for the applicable income and other employment taxes and remitted the cash to the appropriate taxing authorities. The total shares withheld for the six months ended June 30, 2013 and 2012 were 488 thousand and 227 thousand, respectively, and were based on the value of the restricted stock units and awards on their vesting date as determined by our closing stock price. Total payments for the employees’ tax obligations to the taxing authorities are reflected as a financing activity within the consolidated statements of cash flows. These net-share settlements had the effect of share repurchases by us as they reduced the number of shares that would have otherwise been issued as a result of the vesting.
Issuance of Warrants
During June 2013, in connection with the issuance of our 1.25% Cash Convertible Senior Notes, we issued warrants (the “1.25% Warrants” as described in Note 7, “Debt”) for approximately 20.1 million shares of our common stock (subject to antidilution adjustments under certain circumstances) with an initial exercise price of $23.1350 per share, subject to customary adjustments. The net proceeds from the sale of the 1.25% Warrants of approximately $51.2 million are included as additional paid in capital in the accompanying balance sheet as of June 30, 2013. The 1.25% Warrants expire over a period of 70 trading days beginning on October 1, 2020 and are exercisable only upon expiration. For each 1.25% Warrant that is exercised, we will deliver to the option counterparties a number of shares of our common stock equal to the amount by which the settlement price exceeds the exercise price, divided by the settlement price, plus cash in lieu of fractional shares. The number of warrants and the strike price are subject to adjustment under certain circumstances. The 1.25% Warrants could separately have a dilutive effect to the extent that the market value per share of our common stock (as measured under the terms of the warrant transactions) exceeds the applicable strike price of the 1.25% Warrants.
In June 2013, we agreed to issue a warrant to a commercial partner as part of an overall commercial relationship pursuant to which the warrant holder has the right to purchase 1.5 million shares of our common stock at a strike price of $12.94 per share. The warrant vests in four equal annual installments of 375,000 shares (beginning in June 2014) and expires in June 2020. The warrant becomes void if certain specified changes to the parties’ commercial relationship occur. The Company’s issuance of the warrant is a private placement exempt from registration pursuant to Section 4(a)(2) under the Securities Act of 1933, as amended.
Stockholder Rights Plan
The Company is authorized to issue up to 1 million shares of preferred stock, of which 349 thousand shares have been designated as Series A Junior Participating Preferred Stock in connection with the adoption of a rights agreement discussed below. As of June 30, 2013 and December 31, 2012, no shares of preferred stock were issued or outstanding.
On May 5, 2012, our Board of Directors adopted a stockholder rights plan (“Rights Plan”) and declared a dividend distribution of one right (each, a “Right”) for each outstanding share of the Company’s common stock to stockholders of record at the close of business on May 17, 2012. Each Right entitles its holder, under certain circumstances, to purchase from the Company one one-thousandth of a share of Series A Junior Participating Preferred Stock of the Company at an exercise price of $45.00 per Right, subject to adjustment. The description and terms of the Rights are set forth in a Rights Agreement, dated as of May 7, 2012, between the Company and Computershare Shareowner Services LLC, as Rights agent. The Rights Plan expired on May 6, 2013.
 
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5. Earnings Per Share
Basic (loss) income per share is computed by dividing net income by the weighted-average shares of outstanding common stock. For purposes of calculating diluted (loss) income per share, the denominator includes both the weighted average shares of common stock outstanding and dilutive common stock equivalents. Dilutive common stock equivalents consist of stock options, restricted stock unit awards and warrants using the treasury stock method.
The calculations of earnings per share are as follows:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands, except per share amounts)	  	2013	 	 	2012	 	  	2013	 	 	2012	 	
Basic (Loss) Earnings per Common Share:	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Net (loss) income	  	($	22,876	) 	 	$	7,981	  	  	($	34,468	) 	 	$	13,794	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Net (loss) income available to common shareholders	  	($	22,876	) 	 	$	7,981	  	  	($	34,468	) 	 	$	13,794	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Weighted average common shares outstanding	  	 	177,625	  	 	 	182,145	  	  	 	175,678	  	 	 	186,353	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Basic (Loss) Earnings per Common Share	  	($	0.13	) 	 	$	0.04	  	  	($	0.20	) 	 	$	0.07	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
(Loss) Earnings per Common Share Assuming Dilution:	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Net (loss) income	  	($	22,876	) 	 	$	7,981	  	  	($	34,468	) 	 	$	13,794	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Net (loss) income available to common shareholders	  	($	22,876	) 	 	$	7,981	  	  	($	34,468	) 	 	$	13,794	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Weighted average common shares outstanding	  	 	177,625	  	 	 	182,145	  	  	 	175,678	  	 	 	186,353	  	
Dilutive effect of stock options, restricted stock unit awards and warrants	  	 	0	  	 	 	2,433	  	  	 	0	  	 	 	2,047	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
Weighted average common shares outstanding assuming dilution	  	 	177,625	  	 	 	184,578	  	  	 	175,678	  	 	 	188,400	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
(Loss) Earnings per Common Share Assuming Dilution	  	($	0.13	) 	 	$	0.04	  	  	($	0.20	) 	 	$	0.07	  	
 	  	 	 	 	 	 	 	 	  	 	 	 	 	 	 	 	
The following stock options, restricted stock unit awards and warrants are not included in the computation of diluted (loss) earnings per share as the effect of including such stock options, restricted stock unit awards and warrants in the computation would be anti-dilutive:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	  	2012	 	  	2013	 	  	2012	 	
Shares subject to anti-dilutive stock options, restricted stock unit awards and warrants excluded from calculation	  	 	7,038	  	  	 	1,276	  	  	 	4,229	  	  	 	660	  	

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6. Goodwill and Intangible Assets
Goodwill and intangible assets consist of the following:

 	  	June 30, 2013	 	  	December 31, 2012	 	
(In thousands)	  	Gross
Assets	 	  	Accumulated
Amortization	 	 	Intangible
Assets, Net	 	  	Gross
Assets	 	  	Accumulated
Amortization	 	 	Intangible
Assets, Net	 	
Intangibles subject to amortization	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Proprietary technology	  	$	445,960	  	  	($	213,806	) 	 	$	232,154	  	  	$	361,660	  	  	($	197,383	) 	 	$	164,277	  	
Customer contracts and relationships	  	 	542,205	  	  	 	(338,175	) 	 	 	204,030	  	  	 	534,355	  	  	 	(323,646	) 	 	 	210,709	  	
 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Total	  	$	988,165	  	  	($	551,981	) 	 	$	436,184	  	  	$	896,015	  	  	($	521,029	) 	 	$	374,986	  	
 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Intangibles not subject to amortization	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Registered trademarks	  	 	 	 	  	 	 	 	 	$	52,000	  	  	 	 	 	  	 	 	 	 	$	52,000	  	
Goodwill	  	 	 	 	  	 	 	 	 	 	1,189,585	  	  	 	 	 	  	 	 	 	 	 	1,039,364	  	
 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Total	  	 	 	 	  	 	 	 	 	$	1,241,585	  	  	 	 	 	  	 	 	 	 	$	1,091,364	  	
 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
In connection with our acquisitions of dbMotion and Jardogs during the six months ended June 30, 2013, we have recognized additional goodwill in the amount of $153.6 million, of which $136.6 million with respect to dbMotion, including an increase of approximately $3.2 million during the three months ended June 30, 2013 as a result of various measurement period adjustments, has been recognized provisionally and remains subject to future adjustment. Refer to Note 2 Business Combinations for additional information regarding the acquisitions. Changes in the carrying amounts of goodwill by reportable segment for the six months ended June 30, 2013 were as follows (Remote Hosting is an operating segment that does not meet the quantitative thresholds for determining reportable segments; however, we have presented the portion of goodwill allocated to this segment within our reconciliation to consolidated amounts in the table below):

(In thousands)	  	Software
Delivery	 	 	Services
Delivery	 	 	Client
Support	 	 	Pathway
Solutions	 	 	IT
Outsourcing	 	 	Remote
Hosting	 	 	Total	 	
Balance as of December 31, 2012	  	$	320,299	  	 	$	87,665	  	 	$	327,793	  	 	$	208,795	  	 	$	59,029	  	 	$	35,783	  	 	$	1,039,364	  	
Additions arising from business acquisitions:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
dbMotion	  	 	68,064	  	 	 	60,144	  	 	 	8,423	  	 	 	0	  	 	 	0	  	 	 	0	  	 	 	136,631	  	
Jardogs	  	 	0	  	 	 	0	  	 	 	0	  	 	 	17,016	  	 	 	0	  	 	 	0	  	 	 	17,016	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total additions to goodwill	  	 	68,064	  	 	 	60,144	  	 	 	8,423	  	 	 	17,016	  	 	 	0	  	 	 	0	  	 	 	153,647	  	
Impairment of goodwill	  	 	0	  	 	 	0	  	 	 	0	  	 	 	0	  	 	 	0	  	 	 	0	  	 	 	0	  	
Other adjustments to goodwill	  	 	(1,056	) 	 	 	(289	) 	 	 	(1,080	) 	 	 	(688	) 	 	 	(195	) 	 	 	(118	) 	 	 	(3,426	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Balance as of June 30, 2013	  	$	387,307	  	 	$	147,520	  	 	$	335,136	  	 	$	225,123	  	 	$	58,834	  	 	$	35,665	  	 	$	1,189,585	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
There were no accumulated impairment losses associated with our goodwill at June 30, 2013 or December 31, 2012.
 
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7. Debt
Debt outstanding consisted of the following:

 	  	June 30, 2013	 	  	December 31, 2012	 	
(In thousands)	  	Principal
Balance	 	  	Unamortized
Discount	 	  	Net
Carrying
Amount	 	  	Principal
Balance	 	  	Unamortized
Discount	 	  	Net
Carrying
Amount	 	
1.25%Cash Convertible Senior Notes	  	$	345,000	  	  	$	82,477	  	  	$	262,523	  	  	$	0	  	  	$	0	  	  	$	0	  	
Senior Secured Credit Facilities (long-term portion)	  	 	273,750	  	  	 	2,821	  	  	 	270,929	  	  	 	362,697	  	  	 	0	  	  	 	362,697	  	
Senior Secured Credit Facilities (current portion)	  	 	11,250	  	  	 	1,011	  	  	 	10,239	  	  	 	78,770	  	  	 	0	  	  	 	78,770	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Total debt	  	$	630,000	  	  	$	86,309	  	  	$	543,691	  	  	$	441,467	  	  	$	0	  	  	$	441,467	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Interest expense consisted of the following:

 	  	Three Months Ended June 30,	 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	  	2012	 	  	2013	 	  	2012	 	
Interest expense	  	$	3,928	  	  	$	3,098	  	  	$	7,265	  	  	$	5,693	  	
Amortizaton of discounts	  	 	323	  	  	 	0	  	  	 	323	  	  	 	0	  	
Amortizaton of debt issuance costs	  	 	1,347	  	  	 	1,260	  	  	 	2,647	  	  	 	2,519	  	
Write off of unamortized deferred debt issuance costs	  	 	3,901	  	  	 	0	  	  	 	3,901	  	  	 	0	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
Total interest expense	  	$	9,499	  	  	$	4,358	  	  	$	14,136	  	  	$	8,212	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
1.25% Cash Convertible Senior Notes due 2020
On June 18, 2013, we issued $345.0 million aggregate principal amount of 1.25% Cash Convertible Senior Notes due 2020 (the 1.25% Notes). The aggregate net proceeds of the 1.25% Notes were $305.1 million, after payment of the net cost of the Call Spread Overlay described below and transaction costs, including approximately $0.6 million of accrued professional fees at June 30, 2013. Additionally, we used $300 million of the net proceeds to repay a portion of the outstanding indebtedness under the senior secured credit facilities.
Interest on the 1.25% Notes is payable semiannually in arrears on January 1 and July 1 of each year, at a rate of 1.25% per annum commencing on January 1, 2014. The 1.25% Notes will mature on January 1, 2020 unless repurchased or converted in accordance with their terms prior to such date.
The 1.25% Notes are convertible only into cash, and not into shares of our common stock or any other securities. Holders may convert their 1.25% Notes solely into cash at their option at any time prior to the close of business on the business day immediately preceding January 1, 2020 only under the following circumstances: (1) during any calendar quarter commencing after the calendar quarter ending on September 30, 2013 (and only during such calendar quarter), if the last reported sale price of the common stock for at least 20 trading days (whether or not consecutive) during a period of 30 consecutive trading days ending on the last trading day of the immediately preceding calendar quarter is greater than or equal to 130% of the conversion price on each applicable trading day; (2) during the five business day period immediately after any five consecutive trading day period in which the trading price per $1,000 principal amount of 1.25% Notes for each trading day of the measurement period was less than 98% of the product of the last reported sale price of our common stock and the conversion rate on each such trading day; or (3) upon the occurrence of specified corporate events. On or after January 1, 2020 until the close of business on the second scheduled trading day immediately preceding the maturity date, holders may convert their 1.25% Notes solely into cash at any time, regardless of the foregoing circumstances. Upon conversion, in lieu of receiving shares of our common stock, a holder will receive an amount in cash, per $1,000 principal amount of 1.25% Notes, equal to the settlement amount, determined in the manner set forth in the indenture for the 1.25% Notes.
The initial conversion rate will be 58.1869 shares of our common stock per $1,000 principal amount of 1.25% Notes (equivalent to an initial conversion price of approximately $17.19 per share of common stock). The conversion rate will be subject to adjustment in some events but will not be adjusted for any accrued and unpaid interest. In addition, following certain corporate events that occur prior to the maturity date, we will pay a cash make-whole premium by increasing the conversion rate for a holder who elects to convert such holder’s 1.25% Notes in connection with such a corporate event in certain circumstances. We may not redeem the 1.25% Notes prior to the maturity date, and no sinking fund is provided for the 1.25% Notes.
If we undergo a fundamental change (as defined in the indenture for the 1.25% Notes), holders may require us to repurchase for cash all or part of their 1.25% Notes at a repurchase price equal to 100% of the principal amount of the 1.25% Notes to be repurchased, plus accrued and unpaid interest to, but excluding, the fundamental change repurchase date. The indenture provides for customary events of default, including cross acceleration to certain other indebtedness of ours, and our subsidiaries.
The 1.25% Notes are senior unsecured obligations, and rank senior in right of payment to any of our indebtedness that is expressly subordinated in right of payment to the 1.25% Notes; equal in right of payment to any of our unsecured indebtedness that is not so subordinated; effectively junior in right of payment to any of our secured indebtedness to the extent of the value of the assets securing such indebtedness; and structurally junior to all indebtedness and other liabilities (including trade payables) of our subsidiaries.
The 1.25% Notes contain an embedded cash conversion option. We have determined that the embedded cash conversion option is a derivative financial instrument, required to be separated from the 1.25% Notes and accounted for separately as a derivative liability, with changes in fair value reported in our consolidated statements of income until the cash conversion option transaction settles or expires. The initial fair value liability of the embedded cash conversion option was $82.8 million, which simultaneously reduced the carrying value of the 1.25% Notes (effectively an original issuance discount). For further discussion of the derivative financial instruments relating to the 1.25% Notes, refer to Note 9, “Derivative Financial Instruments.”
 
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As noted above, the reduced carrying value on the 1.25% Notes resulted in a debt discount that is amortized to the 1.25% Notes’ principal amount through the recognition of non-cash interest expense over the expected life of the debt, which is seven years. This has resulted in our recognition of interest expense on the 1.25% Notes at an effective rate approximating what we would have incurred had nonconvertible debt with otherwise similar terms been issued. The effective interest rate of the 1.25% Notes is 5.4%, which is imputed based on the amortization of the fair value of the embedded cash conversion option over the remaining term of the 1.25% Notes. As of June 30, 2013, we expect the 1.25% Notes to be outstanding until their July 1, 2020 maturity date, for a remaining amortization period of seven years. The 1.25% Notes’ if-converted value did not exceed their principal amount as of June 30, 2013. Interest expense related to the 1.25% Notes included approximately $0.3 million of discount accretion for the three and six months ended June 30, 2013. Accrued coupon interest and debt cost amortization for the period were not material.
Also in connection with the settlement of the 1.25% Notes, we paid approximately $8.4 million in transaction costs. Such costs have been allocated to the 1.25% Notes, the 1.25% Call Option (defined below) and the 1.25% Warrants (defined below). The amount allocated to the 1.25% Notes, or $8.3 million, was capitalized and will be amortized over the term of the 1.25% Notes. The remaining aggregate amounts allocated to the 1.25% Call Option and 1.25% Warrants were not significant.
1.25% Notes Call Spread Overlay
Concurrent with the issuance of the 1.25% Notes, we entered into privately negotiated hedge transactions (collectively, the 1.25% Call Option) and warrant transactions (collectively, the 1.25% Warrants), with certain of the initial purchasers of the 1.25% Notes (collectively, the Call Spread Overlay). Assuming full performance by the counterparties, the Call Option is intended to offset cash payments in excess of the principal amount due upon any conversion of the 1.25% Notes. We used $82.8 million of the proceeds from the settlement of the 1.25% Notes to pay for the 1.25% Call Option, and simultaneously received $51.2 million for the sale of the 1.25% Warrants, for a net cash outlay of $31.6 million for the Call Spread Overlay. The 1.25% Call Option is a derivative financial instruments and is discussed further in Note 9, “Derivative Financial Instruments.” The 1.25% Warrants are equity instruments and are further discussed in Note 4, “Stockholders’ Equity.”
Aside from the initial payment of a premium to the counterparties of $82.8 million for the 1.25% Call Option, we will not be required to make any cash payments to the counterparties under the 1.25% Call Option, and will be entitled to receive from the counterparties an amount of cash, generally equal to the amount by which the market price per share of common stock exceeds the strike price of the 1.25% Call Options during the relevant valuation period. The strike price under the 1.25% Call Option is initially equal to the conversion price of the 1.25% Notes. Additionally, if the market value per share of our common stock exceeds the strike price of the 1.25% Warrants on any trading day during the 70 trading day measurement period under the 1.25% Warrants, we will, for each such trading day, be obligated to issue to the counterparties a number of shares equal in value to the product of the amount by which such market value exceeds such strike price and 1/70th of the aggregate number of shares of our common stock underlying the 1.25% Warrants transactions, subject to a share delivery cap. We will not receive any additional proceeds if the 1.25% Warrants are exercised. Pursuant to the 1.25% Warrants transactions, we issued 20,074,481 warrants with a strike price of $23.1350 per share. The number of warrants and the strike price are subject to adjustment under certain circumstances.
Credit Facility
On June 28, 2013, we entered into a Credit Agreement (the “2013 Credit Agreement”) with a syndicate of financial institutions. The 2013 Credit Agreement provides for a $225 million senior secured term loan (the “Term Loan”) and a $425 million senior secured revolving facility (the “Revolving Facility”), each with a five year term. The Term Loan is repayable in quarterly installments commencing on September 30, 2013. A total of up to $50 million of the Revolving Facility is available for the issuance of letters of credit, up to $10 million of the Revolving Facility is available for swingline loans, and up to $100 million of the Revolving Facility could be borrowed under certain foreign currencies. On June 28, 2013, we borrowed $60 million under the Revolving Facility in connection with our entry into the 2013 Credit Agreement.
The proceeds of the Term Loan were used to repay the existing debt under the prior credit agreement, and to pay fees and expenses in connection with the refinancing. In conjunction with the closing of the 2013 Credit Agreement, we used a portion of the proceeds from the borrowings under the Revolving Facility to refinance the seller notes and deferred purchase price obligations incurred in connection with our acquisition of dbMotion. The proceeds of the Revolving Facility can be used to finance our working capital needs and for general corporate purposes, including, without limitation, financing of permitted acquisitions, and for share repurchases. We are also permitted to add one or more incremental revolving and/or term loan facilities in an aggregate amount of up to $250 million, subject to certain conditions.
Borrowings under the new senior secured credit facilities will bear interest, at our option (except with respect to foreign currency loans), at a rate per annum equal to either (1) the rate (adjusted for statutory reserve requirements for eurocurrency liabilities and mandatory costs, if any) for deposits in the applicable currency for a period equal to one, two, three or six months or, with respect to loans under the Revolving Facility denominated in United States dollars, subject to availability to all affected lenders, 7 or 14 days (as selected by the Company), appearing on pages LIBOR01 or LIBOR02 or other page displaying such rate for such currency of the Reuters Screen (the “Eurocurrency Rate”) plus the applicable margin or (2) the highest of (a) the rate of interest publicly announced by JPMorgan Chase Bank, N.A. as its prime rate in effect at its principal office in New York City, (b) the federal funds effective rate from time to time plus 0.5%, and (c) the Eurocurrency Rate for United States dollars for a one month interest period plus 1.0%, plus, in each case, the applicable margin. Foreign currency loans will bear interest according to clause (1) above with certain adjustments and fees applicable to fronted foreign currency loans. The applicable margin for borrowings under our new senior secured credit facilities will initially be 1.25% for all loans except for loans based on the Eurocurrency Rate, for which the applicable margin will initially be 2.25%.
Subject to certain agreed upon exceptions, all obligations under the Company’s new senior secured credit facilities will be guaranteed by each of our existing and future direct and indirect material domestic subsidiaries, other than Coniston Exchange LLC and any domestic subsidiary owned by one of our foreign subsidiaries, including dbMotion (the “Guarantors”) pursuant to a related Guarantee and Collateral Agreement, dated as of June 28, 2013 (the “Guarantee and Collateral Agreement”), among the Company, Allscripts Healthcare, LLC and certain other subsidiaries party thereto, and JPMorgan Chase Bank, N.A., as administrative agent.
 
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The obligations of the Company and each Guarantor under our new senior secured credit facilities, any swap agreements and any cash management arrangements provided by any lender, will be secured, subject to permitted liens and other agreed upon exceptions, by a perfected first priority security interest in all of the tangible and intangible assets (including, without limitation, intellectual property, material owned real property and all of the capital stock of each Guarantor and, in the case of foreign subsidiaries, up to 65% of the capital stock of first tier material foreign subsidiaries) of the Company and the Guarantors.
Our new senior secured credit facilities require us to maintain a minimum interest coverage ratio of 4.0 to 1.0, a maximum total leverage ratio of 4.0 to 1.0 and a maximum senior secured leverage ratio of 3.0 to 1.0. The total leverage ratio is calculated by dividing total indebtedness by earnings before interest expense, income tax expense, depreciation and amortization expense, subject to various agreed upon adjustments. The senior secured leverage ratio is calculated by dividing senior secured indebtedness by earnings before interest expense, income tax expense, depreciation and amortization expense, subject to various agreed upon adjustments. The minimum interest coverage ratio is calculated by dividing earnings before interest expense, income tax expense, depreciation and amortization expense by cash interest expense, subject to various agreed upon adjustments. In addition, the 2013 Credit Agreement requires mandatory prepayments of the debt outstanding under the facilities in certain specific circumstances, and contains a number of covenants which, among other things, restrict our ability to incur additional indebtedness, engage in mergers, or declare dividends or other payments in respect of our capital stock.
Our new senior secured credit facilities also contain certain customary events of default, including relating to non-payment, breach of covenants, cross-default, bankruptcy and change of control.
In connection with our entry into the 2013 Credit Agreement, we incurred fees and other costs aggregating approximately $3.1 million. In addition, approximately $5.5 million of deferred costs associated with the previous credit facility will carry over to the 2013 Credit Facility. Of those combined amounts, fees paid directly to the lending parties of approximately $3.8 million have been recorded as an original issue discount and will be amortized to interest expense over the term of the new facilities, and fees and costs of approximately $4.3 million are recorded as deferred charges to be amortized to interest expense over the term of the new facilities. Also in connection with our entry into the 2013 Credit Agreement, approximately $3.4 million of deferred debt issuance costs associated with our previous credit facility and $0.5 million of fees incurred in connection with the new facility were written off to interest expense during the three and six months ended June 30, 2013.
As of June 30, 2013, $225 million in term loans, $60 million under the revolving credit facility, and $1.2 million in letters of credit were outstanding under the 2013 Credit Agreement. As of June 30, 2013, the interest rate on the senior secured credit facilities was LIBOR plus 2.25%, which totaled 2.45%. Refer to Note 10 for a discussion of our interest rate swap agreement. We were in compliance with all covenants under the 2013 Credit Agreement as of June 30, 2013. Unamortized deferred debt issuance costs totaled $12.6 million, and are included within prepaid expenses and other current assets and other assets on the consolidated balance sheet at June 30, 2013.
As of June 30, 2013, we had $363.8 million available, net of outstanding letters of credit, under our revolving credit facility. There can be no assurance that we will be able to draw on the full available balance of our 2013 Credit Agreement if the financial institutions that have extended such credit commitments become unwilling or unable to fund such borrowings.
The following table summarizes our future payments under the 1.25% Notes and our senior secured credit facilities as of June 30, 2013:

(Dollar amounts in thousands)	  	Total	 	  	Remainder of
2013	 	  	2014	 	  	2015	 	  	2016	 	  	2017	 	  	2018	 	  	Thereafter	 	
1.25%Cash Convertible Senior Notes	  	$	345,000	  	  	$	0	  	  	$	0	  	  	$	0	  	  	$	0	  	  	$	0	  	  	$	0	  	  	$	345,000	  	
Senior Secured Term Loan	  	 	225,000	  	  	 	5,625	  	  	 	16,875	  	  	 	28,125	  	  	 	39,375	  	  	 	50,625	  	  	 	84,375	  	  	 	0	  	
Senior Secured Revolving Facility	  	 	60,000	  	  	 	0	  	  	 	0	  	  	 	0	  	  	 	0	  	  	 	0	  	  	 	60,000	  	  	 	0	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
 	  	$	630,000	  	  	$	5,625	  	  	$	16,875	  	  	$	28,125	  	  	$	39,375	  	  	$	50,625	  	  	$	144,375	  	  	$	345,000	  	

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8. Income Taxes
The provision for income taxes reflects our estimate of the effective tax rate expected to be applicable for the full year. To the extent that actual pre-tax results for the year differ from the forecasted estimates applied at the end of the most recent interim period, the actual tax rate recognized during calendar 2013 could be different from the forecast rate. Our provision for income taxes differs from the tax computed at the U.S. federal statutory income tax rate due primarily to income attributable to foreign jurisdictions taxed at lower rates, state taxes, permanent differences, tax credits and certain discrete items. The effective tax rates were as follows:

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	2013	 	 	2012	 	
(Loss) income before income taxes	  	($	37,602	) 	 	$	13,496	  	 	($	62,391	) 	 	$	23,017	  	
Benefit (provision) for income taxes	  	$	14,726	  	 	($	5,515	) 	 	$	27,923	  	 	($	9,223	) 	
Effective tax rate	  	 	39.2	% 	 	 	40.9	% 	 	 	44.8	% 	 	 	40.1	% 	
Our effective tax rate for the three months ended June 30, 2013 is slightly lower than the rate for the same period last year, primarily due to less impact of permanent differences and uncertain tax benefits accrual this year, offset by the impact of the U.S. research and development credit for 2013.
Our effective tax rate for the six months ended June 30, 2013 is higher compared to the prior year, primarily due to the impact of the U.S. research and development credit for 2012 and 2013, enacted on January 1, 2013. The impact of the 2012 credit is included in our tax benefit for the three months ended March 31, 2013 as a discrete item of $2.6 million.
Our unrecognized income tax benefits were $19.4 million and $18.1 million as of June 30, 2013 and December 31, 2012, respectively, the increase of approximately $1.3 million being primarily attributable to unrecognized tax benefits related to research and development tax credits. If any portion of our unrecognized tax benefits is recognized, it could impact our effective tax rate. The tax reserves are reviewed periodically and adjusted in light of changing facts and circumstances, such as progress of tax audits, lapse of applicable statutes of limitations and changes in tax law.
 
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9. Derivative Financial Instruments
1.25% Call Option
We entered into the 1.25% Call Option with certain of the initial purchasers of the 1.25% Notes (the Option Counterparties). These transactions, along with the sale of the 1.25% Warrants (Note 4) represent a Call Spread Overlay (Note 7), We used $82.8 million of the proceeds from the settlement of the 1.25% Notes to pay for the 1.25% Call Option, and simultaneously received $51.2 million for the sale of the 1.25% Warrants, for a net cash outlay of $31.6 million for the Call Spread Overlay. Assuming full performance by the counterparties, the 1.25% Call Option is intended to offset cash payments in excess of the principal amount due upon any conversion of the 1.25% Notes.
Aside from the initial payment of a premium to the counterparties of $82.8 million for the 1.25% Call Option, we will not be required to make any cash payments to the counterparties under the 1.25% Call Option, and will be entitled to receive from the counterparties an amount of cash, generally equal to the amount by which the market price per share of common stock exceeds the strike price of the 1.25% Call Options during the relevant valuation period. The strike price under the 1.25% Call Option is initially equal to the conversion price of the 1.25% Notes.
The 1.25% Call Option, which is indexed to our common stock, is a derivative asset that requires mark-to-market accounting treatment due to the cash settlement features until such transactions settle or expire. The 1.25% Call Option is measured and reported at fair value on a recurring basis, within Level 3 of the fair value hierarchy. For further discussion of the inputs used to determine the fair value of the 1.25% Call Option, refer to Note 3, “Fair Value Measurements.” The fair value of the 1.25% Call Option at June 30, 2013 was approximately $81.1 million.
The 1.25% Call Option does not qualify for hedge treatment, therefore the change in fair value of these instruments is recognized immediately in our consolidated statements of operations in other income (expense). For the three and six months ended June 30, 2013, the change in the fair value of the 1.25% Call Option resulted in a loss of $1.7 million. Because the terms of the 1.25% Call Option essentially mirror those of the 1.25% Notes Embedded Cash Conversion Option, discussed below, we expect the net effect of those two derivative instruments on our earnings to be substantially offsetting.
1.25% Notes Embedded Cash Conversion Option
The embedded cash conversion option within the 1.25% Notes is required to be separated from the 1.25% Notes and accounted for separately as a derivative liability, with changes in fair value reported in our consolidated statements of operations in other income (expense) until the cash conversion option settles or expires. The initial fair value liability of the embedded cash conversion option was $82.8 million, which simultaneously reduced the carrying value of the 1.25% Notes (effectively an original issuance discount). The embedded cash conversion option is measured and reported at fair value on a recurring basis, within Level 3 of the fair value hierarchy. For further discussion of the inputs used to determine the fair value of the embedded cash conversion option, refer to Note 3, “Fair Value Measurements.” The fair value of the embedded cash conversion option at June 30, 2013 was approximately $81.1 million. For the three and six months ended June 30, 2013, the change in the fair value of the embedded cash conversion option resulted in a gain of $1.7 million, offsetting the loss recognized on the 1.25% Call Option.
Interest Rate Swap Agreement
We entered into an interest rate swap agreement with an effective date of October 29, 2010 that has the economic effect of modifying the variable rate component of the interest obligations associated with a portion of our original variable rate term loan. The initial notional amount of the interest rate swap agreement was $300 million, with scheduled step downs over time, and a final termination date of October 31, 2014. At June 30, 2013, the notional amount of the interest rate swap agreement was $175 million. The interest rate swap agreement converts the one-month LIBOR rate on the corresponding notional amount of debt to an effective fixed rate of 0.896% (exclusive of the applicable margin currently charged under the Senior Secured Credit Facilities). The critical terms of the interest rate swap agreement and the related debt agreement match and allow us to designate the interest rate swap agreement as a highly effective cash flow hedge under GAAP. The interest rate swap agreement protects us against changes in interest payments due to benchmark interest rate movements. The change in fair value of this interest rate swap agreement is recognized in other comprehensive income with the corresponding amounts included in other assets or other liabilities in our consolidated balance sheet. Amounts accumulated in other comprehensive income are indirectly recognized in earnings as periodic settlements of the swap occur and the fair value of the swap declines to zero.
 
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The fair value of our interest rate swap was a liability of approximately $0.9 million and $1.5 million at June 30, 2013 and December 31, 2012, respectively. We recognized the following activity related to our interest rate swap agreement:

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	2013	 	 	2012	 	
Effective Portion	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Gain (loss) recognized in OCI	  	$	296	  	 	$	101	  	 	$	649	  	 	($	167	) 	
Tax effect	  	 	(116	) 	 	 	(40	) 	 	 	(252	) 	 	 	66	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Net	  	$	180	  	 	$	61	  	 	$	397	  	 	($	101	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Loss reclassified from OCI to interest expense	  	$	323	  	 	$	469	  	 	$	682	  	 	$	944	  	
Amount excluded from Effectiveness Assessment and Ineffective Portion Gain (loss) recognized in other income (expense)	  	$	0	  	 	$	0	  	 	$	0	  	 	$	0	  	
We estimate that approximately $0.8 million of derivative losses included in other comprehensive income (“OCI”) will be reclassified into earnings within the next 12 months. This amount has been calculated assuming the variable effective interest rate 2.45% as of June 30, 2013 remains the same through the next 12 months. No gains (losses) were reclassified from OCI into earnings as a result of forecasted transactions that failed to occur during the three and six months ended June 30, 2013 and 2012.
 
10. Contingencies
On September 14, 2010, Pegasus Imaging Corporation (“Pegasus”) filed a lawsuit against the Company and AllscriptsMisys, LLC in the Circuit Court of the Thirteenth Judicial Circuit of the State of Florida in and for Hillsborough County, Florida. On the Company’s motion, the case was transferred to the Special Superior Court for Complex Business Cases. The lawsuit also named former officers Jeffrey Amrein and John Reinhart as defendants. Prior to serving the complaint, Pegasus filed an amended complaint dropping two of the claims that had been asserted and adding two additional defendants, which are two now-defunct Florida corporations that formerly did business with the Company. The amended complaint asserted causes of action against defendants for fraudulent misrepresentations, negligent misrepresentations, and deceptive and unfair trade practices under Florida law, allegedly arising from previous business dealings between Pegasus and Advanced Imaging Concepts, Inc., a software company based in Louisville, Kentucky that the Company purchased in August 2003, and from the Company’s testing of a software development toolkit pursuant to a free trial license from Pegasus in approximately 1999. On April 16, 2013, Plaintiff filed a Second Amended Complaint adding claims against the Company for breach of contract, fraud, and negligence. On June 27, 2013, we filed our First Amended Answer, Defenses, and Counterclaims to Plaintiff’s Second Amended Complaint, denying all material allegations, and asserting counterclaims against Pegasus for breach of two license agreements, breach of warranty, breach of a settlement and arbitration agreement, and three counts of negligent misrepresentation. Also on June 27, 2013, Pegasus filed a Motion to Dismiss these Counterclaims. Although the issue has been fully briefed, a hearing has not been set regarding Pegasus’ Motion to Dismiss. The Court recently extended the expert report deadlines in the case (including any rebuttal reports) until September 30, 2013, and has indicated that it will allow some additional, targeted fact discovery beyond the current July 1, 2013 fact discovery deadline, including on issues related to Plaintiff’s damages claim. The case is currently scheduled to be set for trial in November of 2013, although the Court has indicated that this tentative trial date may be continued due to the possible extension of various pretrial deadlines including those related to discovery, mediation, and dispositive motions. We intend to continue to defend this matter and pursue its counterclaims vigorously. We believe that we have a strong position in this matter, but the outcomes of intellectual property-related lawsuits are often uncertain.
On December 27, 2012, Pain Clinic of Northwest Florida, Inc. filed a Complaint in the Circuit Court of the 11th Judicial Circuit in and for Miami-Dade County, Florida, against the Company. On January 29, 2013, a First Amended Complaint was filed in this lawsuit through which the following three additional plaintiffs were added: American Pain Care Specialists, LLC; Advanced Pain Specialists, Inc.; and South Baldwin Family Practice, LLC. The four plaintiffs seek to certify a class of all similarly situated physician-customers that purchased the MyWay product and seek damages for various claims, including breach of warranty and unjust enrichment. On February 5, 2013, the Company filed a motion to compel arbitration and to dismiss or stay the lawsuit during arbitration, and a motion to stay discovery during arbitration, which were both denied by the trial court. We have appealed the denial of the motion to compel arbitration and to dismiss or stay the lawsuit during arbitration, and are currently pursuing that appeal before Florida’s Third District Court of Appeal. On May 6, 2013, the plaintiffs filed a Second Amended Complaint, in which the plaintiffs dropped the claim for breach of warranty, and added claims for tortious interference with business relationships, violations of Florida’s Deceptive and Unfair Trade Practices Act (Fla. Stat. § 501.201,  et seq. ), and violations of various other states’ consumer protection laws. We filed our motion to dismiss the Second Amended Complaint on June 24, 2013 and the Plaintiffs responded on July 16, 2013. We intend to vigorously defend this matter.
 
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On January 30, 2013, Costco Wholesale Corporation delivered a demand for arbitration against the Company in connection with our offer to upgrade our MyWay clients to Allscripts Professional. The demand for arbitration seeks certain equitable relief in connection with the upgrade offer and also seeks damages for breach of contract and breach of an alleged duty of good faith and fair dealing. On February 20, 2013, we responded to the demand for arbitration. Costco has stayed further action in the arbitration pending alternative dispute resolution, but we intend to vigorously defend against these claims if such efforts are unsuccessful.
On February 26, 2013, a lawsuit was filed by Cardinal Health 200, LLC against the Company, Allscripts, LLC and Allscripts Healthcare, LLC in the Court of Common Pleas for Franklin County Ohio. The Complaint, which was served on the Company on March 7, 2013, seeks damages of no less than $3,978,000 for alleged breaches of contract by the Company in connection with the Company’s offer to upgrade its MyWay clients to Allscripts Professional. The Complaint alternatively seeks a declaration that the Company invalidly terminated its agreement with Cardinal. On April 2, 2013, we filed a Petition for Removal to the United States District Court for the Southern District of Ohio. Based on further information exchanged by the parties regarding the parties in the case, the parties stipulated to remand to state court. The parties have engaged in alternative dispute resolution, but we intend to vigorously defend this matter if such efforts are unsuccessful.
In the opinion of management, there was not at least a reasonable possibility the Company may have incurred a material loss, or a material loss in excess of a recorded accrual, with respect to the above matters. However, the outcome of the foregoing litigation is inherently uncertain, and we may incur substantial defense costs and expenses defending these matters. Also, if any of these legal matters were resolved against the Company for an amount in excess of management’s expectations, our consolidated financial statements of a particular reporting period could be materially adversely affected.
On May 1, 2012, Physicians Healthsource, Inc. (“PHI”) filed a class action Complaint in U.S. District Court for the Northern District of Illinois against the Company. The Complaint alleges that on multiple occasions between July 2008 and December 2011, Allscripts or its agent sent advertisements by fax to the Plaintiff and a class of similarly situated persons, without first receiving the recipients’ express permission or invitation in violation of the Telephone Consumer Protection Act, 47 U.S.C. § 227 (“TCPA”). The Complaint seeks $500 for each alleged violation of the TCPA, treble damages if the Court finds the violations to be willful, knowing or intentional, and injunctive and other relief. Allscripts was served with the Complaint and PHI’s Motion for Class Certification on May 7, 2012. The parties await a decision from the 7th Circuit Court of Appeals in the case of Holtzman v. Turza, which could address claims at issue in this case. However, the Court effectively lifted a previous stay for discovery on March 28, 2013, even though a decision in the Holtzman case has not yet been issued. Allscripts filed its Answer and Affirmative Defenses on April 19, 2013. The parties are proceeding with discovery. We intend to vigorously defend against these claims.
On May 2, 2012, a lawsuit was filed in the United States District Court for the Northern District of Illinois against the Company, Glen Tullman, the former Chief Executive Officer, and William Davis, the former Chief Financial Officer of the Company, by the Bristol County Retirement System for itself and on behalf of a purported class consisting of stockholders who purchased Allscripts common stock between November 18, 2010 and April 26, 2012. The Complaint alleges that the Company, Mr. Tullman and Mr. Davis made materially false and misleading statements and/or omissions during the putative class period regarding the Company’s progress in integrating Allscripts’ and Eclipsys’ business following the August 24, 2010 merger and that the Company lacked a reasonable basis for certain statements regarding the Company’s post-merger integration efforts, operations, results and projections of future financial performance. A lead plaintiff has been appointed and on January 10, 2013, Plaintiff filed an amended complaint. On March 14, 2013, we filed a motion to dismiss the lead plaintiff’s amended complaint. On May 9, 2013, Plaintiff filed its opposition to our Motion to Dismiss and also filed a motion seeking leave to amend its amended complaint, which was granted by the Court. On May 28, 2013, we filed a motion to dismiss the amended complaint. On June 24, 2013, Plaintiff filed its opposition to our motion to dismiss and we replied on July 22, 2013. We intend to vigorously defend against these claims.
On June 27, 2012, a purported shareholder, Richard Devereaux, filed a shareholder derivative action in the Circuit Court of Cook County Illinois against Glen Tullman, William Davis, Paul Black, our Chief Executive Officer, and current and former Allscripts board members Dennis Chookaszian, Robert Cindrich, Marcel Gamache, Philip Green, Michael Kluger, and Allscripts as nominal defendant. The suit alleges breach of fiduciary duties and unjust enrichment against former and current executives of Allscripts who allegedly made misleading claims about the Company’s business and financial state, causing its stock prices to be artificially inflated and then drop sharply when the Company reported earnings below expectations and disclosed a “leadership dispute” in an SEC filing. At present, our time to respond to the complaint is tolled pending the resolution of the motion to dismiss in the Bristol County Retirement System lawsuit.
In the opinion of management, there is a reasonable possibility we may incur losses with respect to the three matters immediately above. However, given the current early stage of the matters, it is not possible to estimate the possible loss or range of loss at this time. We will continue to evaluate the potential exposure related to these matters in future periods.
In addition to commitments and obligations in the ordinary course of business, we are subject to various claims, other pending and potential legal actions for damages and other matters arising in the normal conduct of our business, including intellectual property infringement, misappropriation or other intellectual property violation claims.
 
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11. Business Segments
We use the following reportable segments: Software Delivery, Services Delivery, Client Support, Pathway Solutions and IT Outsourcing. Pathway Solutions and IT Outsourcing, which were reported under the Managed Services segment in the first quarter of 2012, and are now separately presented consistent with changes in our internal reporting to our chief operating decision maker.
Software delivery primarily includes revenue from system solutions, which is comprised of software license fees and hardware revenue, and recurring revenue from SaaS contracts and other subscription-based arrangements, which are included in transaction processing and other, and the related expenses incurred to deliver these solutions to our clients. Services delivery derives its revenue through implementation, training and other professional services provided to clients and includes the related expenses incurred to provide these services. Client support derives its revenue through software and hardware maintenance contracts and includes the related expenses incurred to provide support to our customers. Pathway solutions includes revenue and the related expenses incurred from EDI medical claims processing for clients and our patient portal SaaS solution, and IT outsourcing derives its revenue from services provided to clients where we assume partial to total responsibility for a healthcare organization’s IT operations using our employees and assets, and includes the related expenses incurred to deliver IT outsourcing solutions to our clients.
Our chief operating decision maker uses segment revenues and income from operations as measures of performance and to allocate resources. In determining revenue and income from operations for our segments, we do not include the amortization of acquisition-related deferred revenue adjustments in revenue and we exclude amortization of intangible assets and stock-based compensation expense from the operating expense segment data provided to our chief operating decision maker. Accordingly, these amounts are not included in our reportable segment results and are included in the unallocated amounts within All Other.
Corporate general and administrative expenses are centrally managed and research and development expenses, including the amortization of software development costs, are not attributed to an operating segment. As a result, these expenses are not allocated to our reportable segments because they are not part of the segment profitability results reviewed by management. Additionally, we do not track our assets by segment.
Remote Hosting is an operating segment that does not meet the quantitative thresholds for determining reportable segments; however, we have presented the revenues and income from operations related to this segment within our reconciliation to consolidated amounts in the table below.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	2013	 	 	2012	 	
Revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Software Delivery	  	$	76,677	  	 	$	87,642	  	 	$	147,490	  	 	$	167,544	  	
Services Delivery	  	 	59,533	  	 	 	64,783	  	 	 	119,387	  	 	 	135,207	  	
Client Support	  	 	116,692	  	 	 	117,005	  	 	 	234,298	  	 	 	235,359	  	
Pathway Solutions	  	 	40,945	  	 	 	44,048	  	 	 	80,849	  	 	 	87,321	  	
IT Outsourcing	  	 	36,750	  	 	 	40,210	  	 	 	78,986	  	 	 	78,001	  	
Remote Hosting	  	 	16,653	  	 	 	18,017	  	 	 	34,195	  	 	 	34,936	  	
Unallocated Amounts	  	 	(2,423	) 	 	 	(1,749	) 	 	 	(3,312	) 	 	 	(3,700	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total revenue	  	$	344,827	  	 	$	369,956	  	 	$	691,893	  	 	$	734,668	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) income from operations:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Software Delivery	  	$	12,927	  	 	$	17,427	  	 	$	22,603	  	 	$	25,073	  	
Services Delivery	  	 	3,423	  	 	 	8,566	  	 	 	6,675	  	 	 	17,643	  	
Client Support	  	 	79,431	  	 	 	80,305	  	 	 	158,906	  	 	 	161,685	  	
Pathway Solutions	  	 	24,677	  	 	 	27,346	  	 	 	48,821	  	 	 	53,601	  	
IT Outsourcing	  	 	6,435	  	 	 	8,488	  	 	 	14,640	  	 	 	16,320	  	
Remote Hosting	  	 	(1,689	) 	 	 	120	  	 	 	(2,434	) 	 	 	478	  	
Unallocated Amounts	  	 	(153,525	) 	 	 	(124,548	) 	 	 	(305,815	) 	 	 	(244,113	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total (loss) income from operations	  	($	28,321	) 	 	$	17,704	  	 	($	56,604	) 	 	$	30,687	  	

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12. North American Site Consolidation Plan
On February 18, 2013, we announced a North American site consolidation plan (the “Site Consolidation Plan”) designed to create a more simplified and efficient organization that is aligned more closely with our business priorities. The Site Consolidation Plan includes closure of twelve offices and one warehouse. We are also implementing changes to corporate operating models intended to reduce costs associated with product solutions development. The costs of implementing these changes primarily consist of employee severance and relocation costs, and lease exit costs.
During the three and six months ended June 30, 2013, we have incurred $1.5 million and $12.4 million, respectively, in severance costs resulting from the Site Consolidation Plan. We have also incurred relocation and other costs related to the plan of approximately $1.4 million during the three and six months ended June 30, 2013. These costs are included in selling, general and administrative expenses in our consolidated statement of operations for the three and six months ended June 30, 2013. The portion of these costs allocable to our reportable segments is not material. We have a liability for accrued severance and other costs of $8.1 million related to the Site Consolidation Plan included in accrued compensation and benefits in our consolidated balance sheet as of June 30, 2013.
Lease exit costs of up to $1.5 million are expected to be incurred during the six to eighteen months following June 30, 2013 in connection with the Site Consolidation Plan. This amount is an estimate and the actual charges may vary materially based on the timing and amount of sublease income and other related expenses and changes in management’s assumptions.
 
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Item 2.	Management’s Discussion and Analysis of Financial Condition and Results of Operations	
The following discussion should be read along with the unaudited consolidated financial statements included in this Form 10-Q, as well as the Company’s 2012 Annual Report on Form 10-K/A filed with the Securities and Exchange Commission, which provides a more thorough discussion of the Company’s products and services, industry outlook, and business trends.
Overview
Business Acquisitions & Basis of Presentation
On March 4, 2013, we acquired all of the issued and outstanding share capital of dbMotion, Ltd. (dbMotion), a privately-held Israeli Company, for aggregate consideration with a fair value of approximately $225 million, subject to adjustment for certain provisional items. Immediately prior to the closing, we owned approximately 4.25% of the issued and outstanding share capital of dbMotion on a fully diluted basis. In addition, prior to the acquisition we had an ongoing strategic relationship with dbMotion in connection with the development and sale of software solutions to hospitals, physicians and other participants in the healthcare industry. Also on March 4, 2013, we acquired substantially all of the assets of Jardogs LLC (Jardogs) for $24 million in cash.
These acquisitions have been accounted for as purchase business combinations. Under the acquisition method of accounting, the fair value of the consideration transferred for each acquisition was allocated to the respective tangible and intangible assets acquired and liabilities assumed based on their preliminary estimated fair values as of the acquisition date. Our estimates and assumptions are subject to change as we obtain additional information for our estimates during the measurement period (up to one year from the acquisition date). The operating results of dbMotion and Jardogs are included in the accompanying consolidated statements of operations from the date of the acquisitions, March 4, 2013. Refer to Note 2 to our consolidated financial statements for additional information regarding these acquisitions.
Certain prior period amounts in the accompanying consolidated financial statements have been reclassified to conform to the current period presentation. These reclassifications had no effect on previously reported net income or stockholders’ equity.
Business Overview
Allscripts is a leading provider of clinical, financial, connectivity and information solutions and related professional services that empower hospitals, health systems, physician practices, and post-acute organizations to deliver world-class outcomes. We deliver innovative solutions that provide physicians and other healthcare professionals with the information, insights and connectivity required to transform healthcare by improving the quality and efficiency of patient care.
To better deliver comprehensive care coordination and population health management across hospitals, physician practices, and home care systems, in the first quarter Allscripts acquired dbMotion, a leading supplier of community health solutions and Jardogs, a top-rated patient engagement solution provider, both privately held. These acquisitions advance Allscripts’ strategy to offer full integration of heterogeneous systems across the care continuum, enabling solutions for a Connected Community of Health ™ . dbMotion provides a strategic platform for care coordination and population health management that integrates discrete patient data from diverse care settings, regardless of IT supplier, into a single patient record. The Jardogs FollowMyHealth ™  patient engagement platform enables patients to actively participate in their care, critical for at-risk populations, and empowers consumers with the solution they need to monitor and optimize health status. This is also a crucial requirement for our clients’ efforts related to Stage 2 of the EHR Incentive Program (Meaningful Use). Ensuring our clients successfully attest to the requirements associated with that incentive program remains a top priority for us, and all core clinical solutions are now certified as compliant with the 2014 Edition requirements.
We primarily derive our revenue from sales of our proprietary software and related hardware, professional services and IT outsourcing services. These sales also are the basis for our recurring service contracts for software maintenance and certain transaction processing services. Based on the information used by management for making operating decisions and assessing performance, we have identified the following reportable segments: Software Delivery, Services Delivery, Client Support, Pathway Solutions and IT Outsourcing
We believe a combination of executive and legislative leadership at the federal and state levels, the availability of new industry standards, and incentives that exist today for EHR use, ePrescribing and pay-for-quality initiatives are moving us toward an environment when electronic health records are as common as practice management systems in all provider offices. We believe that the Health Information Technology for Economic and Clinical Health Act (HITECH) and other provisions provided by the American Recovery and Reinvestment Act (ARRA) will continue to be a significant driver of healthcare IT adoption. We believe that we are well positioned in the market to take advantage of the material opportunity presented by HITECH.
Management has taken steps to position the Company to have what we believe will be adequate capacity to meet the demand that could result from new orders related to HITECH, as well as requirements related to upgrading the software used by current EHR clients. These steps include supplementing our internal direct sales force with a limited number of strategic distribution partners with established sales forces focused on practices with one to three providers. Further, we have taken steps to improve the efficiency of our approach to new system installations. The Company uses its Speed-to-Value implementation program, which standardizes certain key processes across customer sites and decreases the number of hours required by our professional services team to enable installations of our clinical and practice management solutions. This strategy is predicated on repeatable, best practice workflows and was designed collaboratively by our services and development teams and is proprietary to the Company. The Speed-to-Value program has significantly reduced installation timeframes for our clients.
For our customers to qualify for HITECH funding, our products must meet various requirements for product certification under the HITECH regulations and must enable our customers to achieve Meaningful Use, as such term is currently defined under the 2010 and 2012 Centers for Medicare and Medicaid Services (CMS) Final Rules and under any future HITECH regulations and guidance that CMS may release. The CMS Final Rule provides for a phased approach to implementation of the Meaningful Use standards, with Stage 1 underway, Stage 2 set forth in the 2012 Final Rule and Stage 3 reserved for future rulemaking based on the experiences to date. Given that CMS will release future regulations related to electronic health records, our industry is presented with a challenge in preparing for compliance. Similarly, our ability to achieve product certification by the Certification Commission for Health Information Technology (CCHIT), the Drummond Group and/or other bodies to be accredited in the future, and the length, if any, of additional related development and other efforts required to meet Meaningful Use standards could materially impact our ability to maximize the market opportunity. All of our market-facing Electronic Health Record (EHR) solutions were certified 2011/2012 compliant by an ONC-ATCB, in accordance with the applicable provider or hospital certification criteria adopted by the Secretary of Health and Human Services. Each of our market-facing EHRs have also recently been certified compliant with 2014 Edition requirements. Management has made product development a strategic focus, with gross research and development funding expected to continue to approximate 13% of revenues in the foreseeable future.
 
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We believe that the HITECH Act and other provisions provided by the ARRA will continue to be one of the biggest drivers of healthcare IT adoption. Management believes that to date the HITECH program has resulted in additional related new orders for all of our EHR products. Large physician groups will continue to purchase EHR technology; however, the number of very large practices with over 100 physicians that have not yet acquired such technology is quickly decreasing. Such practices may choose to replace older EHR technology in the future as Meaningful Use regulatory requirements and business realities dictate the need for updates and upgrades, as well as additional features and functionality. Additionally, we believe that a number of companies who certified their EHR products for Stage 1 will not be able to do so in compliance with the requirements for the 2014 Edition, which could present additional opportunities in the replacement market. As the incentive payments end in coming years, we expect that the payment adjustment phase of the program, which penalizes organizations not participating in the EHR Incentive Program, will provide a different motivation for purchase and expansion, particularly among hospitals and the largest practices.
The market for acute-care solutions is highly competitive. Sales cycles can occur over an extended period of time and require hospitals to secure external funding to finance their purchases of new clinical information systems. Several companies that we compete with are privately held, which can provide certain advantages in capturing new client relationships. In addition, the market has increasingly moved toward adoption of integrated solutions that connect various venues of care including hospitals, physician offices, clinics, laboratories, post-acute facilities and other care delivery settings.
We believe small-and medium-sized physician practices (those with three or fewer physicians, and four to 40 physicians, respectively) are increasingly adopting technology driven by a variety of factors, including a desire to maximize federal incentive payments, align with local hospitals, and merge with other practices, as well as other drivers. These offices typically require less time to implement and train than larger offices, so the need to plan implementations well in advance is not as critical as in larger physician organizations.
We have also seen an evolution of buying decisions toward an increase in local community-based buying activity whereby individual hospitals, health systems and integrated delivery networks are subsidizing the purchase of EHR licenses or related services for local, affiliated physicians and across their employed physician base as part of an offer to leverage buying power and help those practices take advantage of the HITECH incentives and other payment reform opportunities. This activity has also resulted in a pull-through effect where smaller practices affiliated with a community hospital are motivated to participate in the incentive program, while the subsidizing health system expands connectivity within the local provider community. This pull-through effect has resulted in new orders for Allscripts Professional EHR targeting small and mid-sized physician practices. Management believes that the anticipated extension of the Stark and Anti-kickback exceptions allowing hospitals and other organizations to subsidize the purchase of EHRs will contribute to the continuation of this market dynamic. Management also believes that the focus on new orders driven by the HITECH program and related to EHR and community-based activity will continue to expand as physicians in those small- and medium-sized practices who have not yet participated seek to qualify for the HITECH incentives for the first time or experience practices upgrade in advance of the start of Stage 2 of the program. The associated challenge we face is to successfully position, sell, implement and support our products to the hospital, health system or integrated delivery network that is subsidizing its affiliated physicians. The community programs we have in place will aid us in penetrating this market.
The vast majority of our customers continue to focus on achieving Meaningful Use under HITECH. As a result, during 2012 and early 2013, much of our professional services deployment capacity was consumed by demand from our customers who wished to upgrade to the most current releases of our EHR products that are certified as meeting Meaningful Use requirements, as well as those requesting implementation of any additional modules required to achieve Meaningful Use. Our professional services margins could be impacted as we continue to supplement our staff with third-party resources to help meet the demand. We expect this trend to continue into the near future as customers react to the finalized requirements for Stage 2 of the EHR Incentive Program.
Although we believe that we have taken and continue to take the proper steps to take advantage of the opportunity presented by HITECH, given the effects the law is having on our customers, there can be no assurance that it will result in significant new orders for us in the near term, and if it does, that we will have the capacity to meet the additional market demand in a timely fashion.
Allscripts today provides one of the most comprehensive solution offerings for healthcare organizations of every size and setting. By combining physician-office and post-acute care solutions with enterprise solutions for hospitals and health systems, we offer a unified portfolio of clinical, financial, connectivity and information solutions, as well as new capabilities to enable analytics, patient connectivity to providers, and the transition to value-based care.
Given the breadth of our solutions portfolio and customer types, we are uniquely positioned to connect physicians, other care providers and patients across all health care provider settings including hospitals, small or large physician practices, post-acute care facilities, or in a home care setting. We continue to compete for net-new opportunities among community hospitals and health systems that are looking to one information technology vendor to provide a single, end-to-end solution across all points of care. We believe our leading market share in the ambulatory space, in particular, gives us a competitive advantage in this regard as hospitals and health systems increasingly seek to leverage the EHR to build referring relationships with independent physicians across the communities they serve.
Additionally, public laws enacted several years ago to reform the U.S. healthcare system may have an impact on our business. The Patient Protection and Affordable Care Act (H.R. 3590; Public Law 111-148) (“PPACA”) and The Health Care and Education and Reconciliation Act of 2010 (H.R. 4872) (the “Reconciliation Act”), which amends the PPACA (collectively the “Health Reform Laws”), were signed into law in March 2010. The Health Reform Laws contain various provisions which may impact the Company and our customers. Some of these provisions (including Accountable Care Organizations and the Comprehensive Primary Care Initiative) may have a positive impact by requiring the expanded use of electronic health records and analytics tools to participate in certain federal programs, for example, while others, such as those mandating reductions in reimbursement for certain types of providers, may have a negative impact by reducing the resources available to purchase our products. Increases in fraud and abuse enforcement and penalties may also adversely affect participants in the healthcare sector, including the Company. Additionally, conversations continue in Congress around the Medicare Sustainable Growth Rate reimbursement model and possible replacement payment methodologies, some of which would further encourage the adoption of health information technology in order to satisfy possible new requirements tying the report of quality measurements to the receipt of payment through Medicare. Resolution of this issue would also address current ambiguities among physician populations and healthcare organizations and allow them to make strategic decisions about the purchase of analytic software or other solutions important to compliance with new legislation.
Such payment and delivery system reform programs as have been launched related to the Medicare program are also increasingly being rolled out at the state level through Medicaid administrators, as well as through the private sector, presenting additional opportunity for us to provide software and services to our clients who participate. As a result, we expect it is likely that the market will demonstrate a need for new revenue cycle management offerings, such as our Sunrise Financial Manager solution, as organizations consider the larger shifts in reimbursement models being rolled out across the payment spectrum, as well as the ICD-10 transition.
 
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Critical Accounting Policies and Estimates
There were no material changes to our critical accounting policies and estimates as previously disclosed in our Annual Report on Form 10-K/A for the year ended December 31, 2012.
Second Quarter 2013 Summary
Bookings, which reflect the value of executed contracts for our solutions, totaled $214 million for the second quarter of 2013 which represents an increase of approximately 20% over the first quarter 2013 level of $178 million and an increase of approximately 9% over second quarter of 2012 bookings of $194. This represents our highest level of quarterly bookings since the fourth fiscal quarter of 2011.
Total revenue for the second quarter of 2013 was $345 million compared with $370 million for the prior year comparable period. Revenue from system sales and professional services declined as we continued to feel the impact of the decline in orders which occurred during the latter part of 2012. During the second quarter of 2013 we have continued our efforts to improve product performance and delivery execution. Revenues from maintenance and transaction processing and other were essentially flat compared with the prior year.
We generated operating cash flows of approximately $11 million in the second quarter of 2013 which compares with $59 million in the prior year comparable period.
Gross research and development spending in the second quarter of 2013 totaled $63 million compared with the prior year spending of $52 million as we continue our development efforts to improve performance and accelerate product integration and innovation, which includes efforts to meet client demand for products that will enable them to achieve Meaningful Use standards.
To serve our clients and the healthcare market better, we have initiated a plan to standardize our small office electronic health record and practice management systems. As part of this plan, we are now in the process of converging, over time, our MyWay and Professional Suite applications (the “MyWay Transition”).
We are upgrading MyWay clients electing to migrate to the converged platform between February 2013 and September 2013, at no additional cost to the MyWay clients. The upgrade will position MyWay clients for Meaningful Use Stage 2 and ICD-10 compliance, and prepare them for the shift to value-based care that focuses on costs, quality and outcomes. MyWay clients not electing to upgrade will continue to have use of the application.
During the second fiscal quarter of 2013 we incurred approximately $6 million in costs associated with the MyWay Transition. Additional non-recurring period costs will be incurred in future quarters to upgrade the MyWay clients that elect to upgrade. The incremental period costs will be partially offset by cost savings we expect to realize through lower development and support costs. The amount of such costs and anticipated savings are not determinable at this time and will ultimately be based on the number of clients electing to migrate.
On February 18, 2013, we announced a North American site consolidation plan (the “Site Consolidation Plan”) designed to create a more simplified and efficient organization that is aligned more closely with our business priorities. The Site Consolidation Plan includes closure of twelve offices and one warehouse. We are also implementing changes to corporate operating models intended to reduce costs associated with product solutions development. The costs of implementing these changes primarily consist of employee severance and relocation costs, and lease exit costs. During the three months ended June 30, 2013 we incurred employee severance and other costs related to the Site Consolidation Plan of approximately $3 million. Additional estimated costs yet to be incurred in connection with the Site Consolidation Plan include lease exit costs totaling approximately $1.5 million. We expect to complete the actions and incur all remaining costs by the end of 2014.
During the three months ended June 30, 2013, we incurred approximately $6 million of acquisition-related costs in connection with the dbMotion acquisition. These costs, which are included in selling, general and administrative expenses in our accompanying statement of operations for the three months ended June 30, 2013, include a charge of approximately $3 million related to product consolidation activities.
During the second fiscal quarter of 2013, we completed two significant capital structure initiatives designed to provide us with improved capital efficiency as well as enhanced financial flexibility by extending the maturities of our debt, increasing our liquidity and lowering our cash interest costs. First, on June 18, 2013, we issued $345.0 million aggregate principal amount of 1.25% Cash Convertible Senior Notes due 2020 (the 1.25% Notes). The aggregate net proceeds of the 1.25% Notes were $305.1 million, after payment of the net cost of the Call Spread Overlay described below and transaction costs, including approximately $0.6 million of accrued professional fees at June 30, 2013. Additionally, we used $300 million of the net proceeds to repay a portion of the outstanding indebtedness under the senior secured credit facilities. Second, on June 28, 2013, we entered into the 2013 Credit Agreement, which provides for a $225 million senior secured term loan and a $425 million senior secured revolving facility, each with a term of five years. The proceeds from the term loan were used to retire all remaining amounts outstanding under the previous credit facility. On June 28, 2013, we borrowed $60 million under the new revolving facility of which approximately $39 million was used to pay off certain interest-bearing obligations associated with our acquisition of dbMotion. In connection with the execution of these two debt transactions, we recognized additional interest expense during the three months ended June 30, 2013 of approximately $4 million, which primarily represents the write-off of previously deferred debt issuance costs associated with our previous credit facilities.
 
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Overview of Consolidated Results
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
System sales	  	$	32,449	  	 	$	43,716	  	 	 	(25.8	%) 	 	$	59,480	  	 	$	80,956	  	 	 	(26.5	%) 	
Professional services	  	 	59,206	  	 	 	67,380	  	 	 	(12.1	%) 	 	 	120,290	  	 	 	138,866	  	 	 	(13.4	%) 	
Maintenance	  	 	116,204	  	 	 	116,748	  	 	 	(0.5	%) 	 	 	233,912	  	 	 	235,032	  	 	 	(0.5	%) 	
Transaction processing and other	  	 	136,968	  	 	 	142,112	  	 	 	(3.6	%) 	 	 	278,211	  	 	 	279,814	  	 	 	(0.6	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total revenue	  	 	344,827	  	 	 	369,956	  	 	 	(6.8	%) 	 	 	691,893	  	 	 	734,668	  	 	 	(5.8	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Cost of revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
System sales (exclusive of amortization of software development costs and acquisition-related assets shown below)	  	 	13,080	  	 	 	19,124	  	 	 	(31.6	%) 	 	 	26,409	  	 	 	35,760	  	 	 	(26.1	%) 	
Amortization of software development costs and acquisition-related asstes	  	 	19,991	  	 	 	15,939	  	 	 	25.4	% 	 	 	39,530	  	 	 	30,888	  	 	 	28.0	% 	
Professional services	  	 	57,401	  	 	 	57,024	  	 	 	0.7	% 	 	 	114,983	  	 	 	118,726	  	 	 	(3.2	%) 	
Maintenance	  	 	35,426	  	 	 	36,282	  	 	 	(2.4	%) 	 	 	72,023	  	 	 	72,286	  	 	 	(0.4	%) 	
Transaction processing and other	  	 	82,647	  	 	 	84,097	  	 	 	(1.7	%) 	 	 	168,238	  	 	 	163,841	  	 	 	2.7	% 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total cost of revenue	  	 	208,545	  	 	 	212,466	  	 	 	(1.8	%) 	 	 	421,183	  	 	 	421,501	  	 	 	(0.1	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Gross profit	  	 	136,282	  	 	 	157,490	  	 	 	(13.5	%) 	 	 	270,710	  	 	 	313,167	  	 	 	(13.6	%) 	
    % of Revenue	  	 	39.5	% 	 	 	42.6	% 	 	 	 	 	 	 	39.1	% 	 	 	42.6	% 	 	 	 	 	
Selling, general and administrative expenses	  	 	104,402	  	 	 	92,291	  	 	 	13.1	% 	 	 	208,634	  	 	 	189,608	  	 	 	10.0	% 	
Research and development	  	 	51,822	  	 	 	38,240	  	 	 	35.5	% 	 	 	102,800	  	 	 	74,362	  	 	 	38.2	% 	
Amortization of intangible and acquisition-related assets	  	 	8,379	  	 	 	9,255	  	 	 	(9.5	%) 	 	 	15,880	  	 	 	18,510	  	 	 	(14.2	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Income from operations	  	 	(28,321	) 	 	 	17,704	  	 	 	(260.0	%) 	 	 	(56,604	) 	 	 	30,687	  	 	 	(284.5	%) 	
Interest expense	  	 	(9,499	) 	 	 	(4,358	) 	 	 	118.0	% 	 	 	(14,136	) 	 	 	(8,212	) 	 	 	72.1	% 	
Interest income and other (expense), net	  	 	218	  	 	 	150	  	 	 	45.3	% 	 	 	8,349	  	 	 	542	  	 	 	1,440.0	% 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) income before income taxes	  	 	(37,602	) 	 	 	13,496	  	 	 	(378.6	%) 	 	 	(62,391	) 	 	 	23,017	  	 	 	(371.1	%) 	
Benefit (provision) for income taxes	  	 	14,726	  	 	 	(5,515	) 	 	 	(367.0	%) 	 	 	27,923	  	 	 	(9,223	) 	 	 	(402.8	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Effective tax rate	  	 	39.2	% 	 	 	40.9	% 	 	 	 	 	 	 	44.8	% 	 	 	40.1	% 	 	 	 	 	
Net (loss) income	  	($	22,876	) 	 	$	7,981	  	 	 	(386.6	%) 	 	($	34,468	) 	 	$	13,794	  	 	 	(349.9	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
NM – not meaningful
 
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Revenue

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Revenue:	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	
System sales	  	$	32,449	  	  	$	43,716	  	  	 	(25.8	%) 	 	$	59,480	  	  	$	80,956	  	  	 	(26.5	%) 	
Professional services	  	 	59,206	  	  	 	67,380	  	  	 	(12.1	%) 	 	 	120,290	  	  	 	138,866	  	  	 	(13.4	%) 	
Maintenance	  	 	116,204	  	  	 	116,748	  	  	 	(0.5	%) 	 	 	233,912	  	  	 	235,032	  	  	 	(0.5	%) 	
Transaction processing and other	  	 	136,968	  	  	 	142,112	  	  	 	(3.6	%) 	 	 	278,211	  	  	 	279,814	  	  	 	(0.6	%) 	
 	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	
Total revenue	  	$	344,827	  	  	$	369,956	  	  	 	(6.8	%) 	 	 	691,893	  	  	 	734,668	  	  	 	(5.8	%) 	
 	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	  	 	 	 	  	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Total revenue decreased during the three and six months ended June 30, 2013 compared with the prior year comparable periods primarily due to decreases in system sales and professional services. The decrease in system sales for the three and six months ended June 30, 2013, which consists of a $6 million and $15 million decrease, respectively, in software revenue along with a $5 million and $6 million decrease, respectively, in hardware revenue is attributable to a decline in orders which occurred during the latter part of 2012, during which time bookings were impacted by speculation about Allscripts’ future corporate autonomy and the timing of new product releases. Additionally, we continue to experience a shift in sales to smaller physician practices which typically require less robust hardware solutions. Professional services revenue decreased compared with the prior year as a result of the decline in orders referenced above and a decrease in consulting services. During the first half of 2013 we have continued our efforts to improve product performance and delivery execution, and we believe that the market has responded well to these initiatives as evidenced by a 20% increase in system sales during the second quarter of 2013 as compared with the first quarter of 2013 and a 21% increase in bookings for those same periods.
Gross Profit

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Total cost of revenue	  	$	208,545	  	 	$	212,466	  	 	 	(1.8	%) 	 	 	421,183	  	 	 	421,501	  	 	 	(0.1	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Gross profit	  	$	136,282	  	 	$	157,490	  	 	 	(13.5	%) 	 	 	270,710	  	 	 	313,167	  	 	 	(13.6	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
% of Revenue	  	 	39.5	% 	 	 	42.6	% 	 	 	 	 	 	 	39.1	% 	 	 	42.6	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Gross profit decreased during the three and six months ended June 30, 2013 compared with the prior year comparable periods as we realized a decrease in revenues while costs of revenue increased primarily due to an increase in transaction processing and other costs as we added headcount and made infrastructure improvements in response to increased demand for our SaaS and hosting solutions. This increase and a $2 million and $5 million increase in the amortization of software development costs for the three and six months ended June 30, 2013, respectively, were partially offset by decreases in costs of revenue associated with lower system sales and professional services revenue. Gross profit as a percent of revenue declined compared with the prior year due primarily to a higher mix of third-party systems sales which carry lower gross margin and the increases in amortization of software development costs and transaction processing-related costs discussed above. Additionally, we experienced a decline in our billable utilization rate as the service hours delivered on various implementation projects exceeded original estimates as we worked to enhance implementation success.
Selling, General and Administrative Expenses

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Selling, general and administrative expenses	  	$	104,402	  	  	$	92,291	  	  	 	13.1	% 	 	 	208,634	  	  	 	189,608	  	  	 	10.0	% 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Selling, general and administrative expenses during the three and six months ended June 30, 2013 increased compared to the prior year. Significant increases during the three and six months ended June 30, 2013 included: severance costs of approximately $3 million and $15 million, respectively, including $2 million and $ 11 million, respectively, associated with the Site Consolidation Plan; a portion of the MyWay Transition costs of approximately $3 million and $7 million, respectively; and transaction costs associated with the acquisitions of dbMotion and Jardogs of approximately $6 million and $8 million, respectively, which includes approximately $3 million for the three and six months ended June 30, 2013 related to product consolidation activities. In addition to transaction costs, dbMotion and Jardogs together added $3 million and $4 million of selling, general and administrative expenses for the three and six months ended June 30, 2013 that were not present in the prior year periods. These increases were partially offset by decreases in other costs including legal expenses and facility occupancy costs.
 
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Research and Development

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Research and development	  	$	51,822	  	  	$	38,240	  	  	 	35.5	% 	 	$	102,800	  	  	$	74,362	  	  	 	38.2	% 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Research and development expenses increased in the three and six months ended June 30, 2013 over the comparable prior year periods primarily due to an increase in people-related expenses as we increased headcount in order to accelerate development efforts to improve performance and accelerate product integration and innovation, which includes efforts to meet client demand for products that will enable them to achieve Meaningful Use standards. This increased level of research and development spending has enabled us to achieve certification for all of our core EHR platforms during the second fiscal quarter of 2013, a critical step to ensure client readiness to support Meaningful Use Stage 2 attestation. Also contributing to the increase for the three and six months ended June 30, 2013 is a decrease in the capitalization of software development costs as fewer development efforts were eligible for capitalization due to the nature of the work being performed and the development status of projects.
Amortization of Intangible and Acquisition-Related Assets

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Amortization of intangible and acquisition-related assets	  	$	8,379	  	  	$	9,255	  	  	 	(9.5	%) 	 	$	15,880	  	  	$	18,510	  	  	 	(14.2	%) 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Amortization of intangible and acquisition-related assets recognized during the three and six months ended June 30, 2013 decreased compared with the prior year comparable period as certain amortization periods ended and intangible asset amounts were fully amortized, partially offset by amortization of intangible assets recently acquired through the dbMotion and Jardogs acquisitions.
Interest Expense

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Interest expense	  	($	9,499	) 	 	($	4,358	) 	 	 	118.0	% 	 	($	14,136	) 	 	($	8,212	) 	 	 	72.1	% 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Interest expense increased during the three and six months ended June 30, 2013 compared to the prior year by approximately $5.1 million and $5.9 million, respectively. Included in the increases was the write-off of approximately $3.9 million of deferred debt issuance costs associated with our previous senior secured credit facilities which were replaced in late June 2013, and interest expense of approximately $0.9 million and $1.2 million for the three and six months ended June 30, 2013, respectively, payable on obligations arising from the acquisition of dbMotion. The remaining increase for the periods is primarily related to increased debt outstanding associated with the incremental term loan executed in June 2012 and borrowings on the revolving credit facility associated with our acquisition of dbMotion in March 2013. The effect of higher average debt levels was partially offset by the reduction in the notional amount of our interest rate swap agreement.
Interest Income and Other, Net

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Interest income and other, net	  	$	218	  	  	$	150	  	  	 	45.3	% 	 	$	8,349	  	  	$	542	  	  	 	1440.4	% 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Interest income and other, net for the six months ended June 30, 2013 includes a gain of $4.7 million resulting from the January 2013 sale of our investment in Humedica, Inc., as well as a gain of $3.4 million realized upon the adjustment to fair value of our prior interest in dbMotion upon our acquisition of the full remaining interest in dbMotion in March 2013.
 
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Provision for Income Taxes

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Benefit (provision) for income taxes	  	$	14,726	  	 	($	5,515	) 	 	 	(367.0	%) 	 	$	27,923	  	 	($	9,223	) 	 	 	(402.8	%) 	
Effective tax rate	  	 	39.2	% 	 	 	40.9	% 	 	 	 	 	 	 	44.8	% 	 	 	40.1	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Our effective tax rate for the three months ended June 30, 2013 is slightly lower than the rate for the same period last year, primarily due to less impact of permanent differences and uncertain tax benefits accrual this year, offset by the impact of the U.S. research and development credit for 2013.
Our effective tax rate for the six months ended June 30, 2013 is higher compared to the prior year, primarily due to the impact of the U.S. research and development credit for 2012 and 2013, enacted on January 1, 2013. The impact of the 2012 credit is included in our tax benefit for the three months ended March 31, 2013 as a discrete item of $3 million.
 
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Segment Operations
Overview of Segment Results

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Software Delivery	  	$	76,677	  	 	$	87,642	  	 	 	(12.5	%) 	 	$	147,490	  	 	$	167,544	  	 	 	(12.0	%) 	
Services Delivery	  	 	59,533	  	 	 	64,783	  	 	 	(8.1	%) 	 	 	119,387	  	 	 	135,207	  	 	 	(11.7	%) 	
Client Support	  	 	116,692	  	 	 	117,005	  	 	 	(0.3	%) 	 	 	234,298	  	 	 	235,359	  	 	 	(0.5	%) 	
Pathway Solutions	  	 	40,945	  	 	 	44,048	  	 	 	(7.0	%) 	 	 	80,849	  	 	 	87,321	  	 	 	(7.4	%) 	
IT Outsourcing	  	 	36,750	  	 	 	40,210	  	 	 	(8.6	%) 	 	 	78,986	  	 	 	78,001	  	 	 	1.3	% 	
Remote Hosting	  	 	16,653	  	 	 	18,017	  	 	 	(7.6	%) 	 	 	34,195	  	 	 	34,936	  	 	 	(2.1	%) 	
Unallocated Amounts	  	 	(2,423	) 	 	 	(1,749	) 	 	 	38.5	% 	 	 	(3,312	) 	 	 	(3,700	) 	 	 	(10.5	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total revenue	  	$	344,827	  	 	$	369,956	  	 	 	(6.8	%) 	 	$	691,893	  	 	$	734,668	  	 	 	(5.8	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Loss) income from operations:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Software Delivery	  	$	12,927	  	 	$	17,427	  	 	 	(25.8	%) 	 	$	22,603	  	 	$	25,073	  	 	 	(9.9	%) 	
Services Delivery	  	 	3,423	  	 	 	8,566	  	 	 	(60.0	%) 	 	 	6,675	  	 	 	17,643	  	 	 	(62.2	%) 	
Client Support	  	 	79,431	  	 	 	80,305	  	 	 	(1.1	%) 	 	 	158,906	  	 	 	161,685	  	 	 	(1.7	%) 	
Pathway Solutions	  	 	24,677	  	 	 	27,346	  	 	 	(9.8	%) 	 	 	48,821	  	 	 	53,601	  	 	 	(8.9	%) 	
IT Outsourcing	  	 	6,435	  	 	 	8,488	  	 	 	(24.2	%) 	 	 	14,640	  	 	 	16,320	  	 	 	(10.3	%) 	
Remote Hosting	  	 	(1,689	) 	 	 	120	  	 	 	(1507.5	%) 	 	 	(2,434	) 	 	 	478	  	 	 	(609.2	%) 	
Unallocated Amounts	  	 	(153,525	) 	 	 	(124,548	) 	 	 	23.3	% 	 	 	(305,815	) 	 	 	(244,113	) 	 	 	25.3	% 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total (loss) income from operations	  	($	28,321	) 	 	$	17,704	  	 	 	(260.0	%) 	 	($	56,604	) 	 	$	30,687	  	 	 	(284.5	%) 	

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Software Delivery
Software delivery primarily includes revenue from system solutions, which is comprised of software license fees and hardware revenue, and recurring revenue from SaaS contracts and other subscription-based arrangements, which are included in transaction processing and other, and the related expenses incurred to deliver these solutions to our clients.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue	  	$	76,677	  	 	$	87,642	  	 	 	(12.5	%) 	 	$	147,490	  	 	$	167,544	  	 	 	(12.0	%) 	
Income from operations	  	$	12,927	  	 	$	17,427	  	 	 	(25.8	%) 	 	$	22,603	  	 	$	25,073	  	 	 	(9.9	%) 	
Operating margin %	  	 	16.9	% 	 	 	19.9	% 	 	 	 	 	 	 	15.3	% 	 	 	15.0	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Software delivery revenue decreased during the three and six months ended June 30, 2013 as compared with the comparable prior year periods due to a decrease in system sales which consists of a $6 million and $16 million decrease, respectively, in software revenue along with a $5 million and $6 million decrease, respectively, in hardware revenue as we continued to feel the impact of the decline in orders which occurred during the latter part of 2012. Additionally, we continue to experience a shift in sales to smaller physician practices which typically require less robust hardware solutions. Partially offsetting these decreases was an increase in SaaS and subscription-based revenues during the three and six months ended June 30, 2013 compared with the prior year period as we expanded our customer base. During the first half of 2013 we have continued our efforts to improve product performance and delivery execution, and we believe that the market has responded well to these initiatives as evidenced by an 8% increase in software sales during the second quarter of 2013 as compared with the first quarter of 2013 and a 33% increase in bookings for those same periods.
Software delivery operating margins declined in the three and six months ended June 30, 2013 as compared with the comparable prior year periods primarily due to a higher mix of third-party systems sales which carry lower gross margin and higher amortization of acquired intangibles and capitalized software.
 
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Services Delivery
Services delivery derives its revenue through implementation, training and other professional services provided to clients and includes the related expenses incurred to provide these services.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue	  	$	59,533	  	 	$	64,783	  	 	 	(8.1	%) 	 	$	119,387	  	 	$	135,207	  	 	 	(11.7	%) 	
Income from operations	  	$	3,423	  	 	$	8,566	  	 	 	(60.0	%) 	 	$	6,675	  	 	$	17,643	  	 	 	(62.2	%) 	
Operating margin %	  	 	5.7	% 	 	 	13.2	% 	 	 	 	 	 	 	5.6	% 	 	 	13.0	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Services delivery revenue decreased during the three and six months ended June 30, 2013 as compared with the comparable prior year periods as a result of the decline in systems orders (as discussed in previous sections) and a decrease in consulting services.
Services delivery operating margin decreased during the three and six months ended June 30, 2013 as compared with the comparable prior year periods due to the size of the revenue decline relative to our service staffing levels. Additionally, we experienced a decline in our billable utilization rate as the service hours delivered on various implementation projects exceeded original estimates as we worked to enhance implementation success.
 
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Client Support
Client support derives its revenue through software and hardware maintenance contracts and includes the related expenses incurred to provide support to our customers.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue	  	$	116,692	  	 	$	117,005	  	 	 	(0.3	%) 	 	$	234,298	  	 	$	235,359	  	 	 	(0.5	%) 	
Income from operations	  	$	79,431	  	 	$	80,305	  	 	 	(1.1	%) 	 	$	158,906	  	 	$	161,685	  	 	 	(1.7	%) 	
Operating margin %	  	 	68.1	% 	 	 	68.6	% 	 	 	 	 	 	 	67.8	% 	 	 	68.7	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Client support revenue decreased slightly for the three and six months ended June 30, 2013 compared with the prior year as the decline in system sales reduced the number of new client activations, an activation being the point at which the invoicing of maintenance commences.
Client support operating margins for the three and six months ended June 30, 2013 were essentially flat compared with the prior year periods.
 
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Pathway Solutions
Pathway solutions includes revenue and the related expenses for financial, administrative, and clinical offerings, including medical claims processing and other Revenue Cycle Solutions, ePrescribe and Patient Portal.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue	  	$	40,945	  	 	$	44,048	  	 	 	(7.0	%) 	 	$	80,849	  	 	$	87,321	  	 	 	(7.4	%) 	
Income from operations	  	$	24,677	  	 	$	27,346	  	 	 	(9.8	%) 	 	$	48,821	  	 	$	53,601	  	 	 	(8.9	%) 	
Operating margin %	  	 	60.3	% 	 	 	62.1	% 	 	 	 	 	 	 	60.4	% 	 	 	61.4	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
Pathway solutions revenue decreased during the three and six months ended June 30, 2013 primarily due to a decrease in demand for certain medical claims processing solutions, including those for billing and collection processing.
Pathway solutions operating margin as a percentage of revenue for the three months ended June 30, 2013 declined slightly as compared with the prior year periods.
 
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IT Outsourcing
IT outsourcing includes revenue from our information technology outsourcing solutions and includes the related expenses incurred to deliver these solutions to our clients.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue	  	$	36,750	  	 	$	40,210	  	 	 	(8.6	%) 	 	$	78,986	  	 	$	78,001	  	 	 	1.3	% 	
Income from operations	  	$	6,435	  	 	$	8,488	  	 	 	(24.2	%) 	 	$	14,640	  	 	$	16,320	  	 	 	(10.3	%) 	
Operating margin %	  	 	17.5	% 	 	 	21.1	% 	 	 	 	 	 	 	18.5	% 	 	 	20.9	% 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
IT outsourcing revenue decreased during the three months ended June 30, 2013 and saw only a slight year-over-year increase for the six months ended June 30, 2013, primarily due to customer attrition. However, bookings for our outsourcing solutions for the second fiscal quarter of 2013 grew by double digits over both the first quarter of 2013 and the second quarter of 2012.
IT outsourcing operating margin decreased during the three and six months ended June 30, 2013 as headcount-related costs and costs of third-party outsourcing services remain high relative to revenues as we respond to the increased demand for our IT outsourcing solutions.
 
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All Other
Corporate general and administrative expenses are centrally managed and solutions research and development expenses, including amortization of capitalized software development costs, are not attributed to an operating segment. As a result, these expenses are not allocated to our reportable segments because they are not part of the segment profitability results reviewed by management.
In determining revenue and income from operations for our segments, we do not include the amortization of acquisition-related deferred revenue adjustments in revenue and we exclude amortization of intangible assets and stock-based compensation expense from the operating expense segment data provided to our chief operating decision maker. Accordingly, these amounts are not included in our reportable segment results and are included in the unallocated amounts within All Other.

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in thousands)	  	2013	 	 	2012	 	 	% Change	 	 	2013	 	 	2012	 	 	% Change	 	
Revenue:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Remote Hosting	  	$	16,653	  	 	$	18,017	  	 	 	(7.6	%) 	 	$	34,195	  	 	$	34,936	  	 	 	(2.1	%) 	
Unallocated Amounts	  	 	(2,423	) 	 	 	(1,749	) 	 	 	38.5	% 	 	 	(3,312	) 	 	 	(3,700	) 	 	 	(10.5	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total revenue	  	$	14,230	  	 	$	16,268	  	 	 	(12.5	%) 	 	$	30,883	  	 	$	31,236	  	 	 	(1.1	%) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Income from operations:	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Remote Hosting	  	($	1,689	) 	 	$	120	  	 	 	(1507.5	%) 	 	($	2,434	) 	 	$	478	  	 	 	(609.2	%) 	
Unallocated Amounts	  	 	(153,525	) 	 	 	(124,548	) 	 	 	23.3	% 	 	 	(305,815	) 	 	 	(244,113	) 	 	 	25.3	% 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total income from operations	  	($	155,214	) 	 	($	124,428	) 	 	 	24.7	% 	 	($	308,249	) 	 	($	243,635	) 	 	 	26.5	% 	
 	  	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Three and Six Months Ended June 30, 2013 Compared with the Three and Six Months Ended June 30, 2012
The financial information above includes revenue primarily from our Remote Hosting operating segment and similar amounts of operating expenses related to this segment are included in income from operations for all periods presented. Operating loss for the three and six months ended June 30, 2013 is primarily attributable to an increase in the cost of third-party services related to certain of our customer contracts.
Unallocated expenses increased during the three and six months ended June 30, 2013 primarily due to a $14 million and $38 million increase, respectively, in personnel costs including severance costs of $2 million and $12 million, respectively, associated with the Site Consolidation Plan as well as an increase in research and development headcount. Also contributing to the increase is a $2 million and $5 million increase, respectively, in amortization of software development costs compared to the prior year, along with a $3 million and $7million decrease, respectively, in the capitalization of software development costs as certain quality and efficiency development efforts were not eligible for capitalization. Additional expenses included transaction costs associated with the acquisitions of dbMotion and Jardogs of approximately $6 million and $8 million for the three and six months ended June 30, 2013, respectively, which included approximately $3 million for the three and six months ended June 30, 2013 related to product consolidation activities, as well as other additional selling, general and administrative expenses of the acquired businesses of approximately $3 million and $4 million, respectively, that were not present in the prior year periods. These increases were partially offset by a $2 million and $5 million decrease, respectively, in general corporate legal expenses.
 
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Contract Backlog
Contract backlog represents the value of bookings and maintenance contracts that have not yet been recognized as revenue. A summary of contract backlog by revenue category is as follows:

 	  	As of	 	  	As of	 	  	As of	 	  	% Change from June 30, 2013	 	
 	  	June 30,	 	  	December 31,	 	  	June 30,	 	  	December 31,	 	 	June 30,	 	
(Dollar amounts in millions)	  	2013	 	  	2012	 	  	2012	 	  	2012	 	 	2012	 	
Contract backlog:	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
System sales	  	$	96	  	  	$	107	  	  	$	122	  	  	 	(10.3	%) 	 	 	(21.3	%) 	
Professional services	  	 	384	  	  	 	376	  	  	 	381	  	  	 	2.1	% 	 	 	0.8	% 	
Maintenance	  	 	845	  	  	 	875	  	  	 	849	  	  	 	(3.4	%) 	 	 	(0.5	%) 	
Transaction processing
and other	  	 	1,871	  	  	 	1,450	  	  	 	1,485	  	  	 	29.0	% 	 	 	26.0	% 	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Total contract backlog	  	$	3,196	  	  	$	2,808	  	  	$	2,837	  	  	 	13.8	% 	 	 	12.7	% 	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	 	 	 	 	
Total contract backlog as of June 30, 2013 increased compared with both December 31, 2012 and June 30, 2012 primarily due to an increase in transaction processing services, which was positively influenced by the extension of our outsourcing agreement with one of our largest clients through 2020, partially offset by declines in system sales and maintenance, as those two categories continued to feel the impact of the decline in orders which occurred during the latter part of 2012.
Bookings
Bookings reflect the value of executed contracts for software, hardware, services, remote hosting, outsourcing and SaaS. Bookings were as follows:

 	  	Three Months Ended June 30,	 	 	Six Months Ended June 30,	 	
(Dollar amounts in millions)	  	2013	 	  	2012	 	  	% Change	 	 	2013	 	  	2012	 	  	% Change	 	
Bookings	  	$	214	  	  	$	194	  	  	 	10.3	% 	 	$	392	  	  	$	389	  	  	 	0.8	% 	
Bookings for the three and six months ended June 30, 2013 have begun to show a recovery from the declines experienced in the second half of 2012. During the first half of 2013 we have continued our efforts to improve product performance and delivery execution, and we believe that the market has responded well to these initiatives as evidenced by a 21% increase in bookings for the second quarter of 2013 as compared with the first quarter of 2013. This represents our highest level of quarterly bookings since the fourth fiscal quarter of 2011. A major driver of the bookings increase relates to our Population Health Management solutions, which include Allscripts Care Management, dbMotion, the Follow My Health patient portal, Care Director as well as our post-acute, decision support and clinical analytics solutions. These solutions saw double-digit bookings increases in the second fiscal quarter of 2013 over both the first quarter of 2013 and the second quarter of 2012.
 
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Liquidity and Capital Resources
As of June 30, 2013 and 2012, our principal sources of liquidity consisted of cash, cash equivalents and marketable securities of $73 million and $177 million, respectively, and our revolving credit facility described below. The change in our cash balance is reflective of the following:
Operating Cash Flow Activities

 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	  	$ Change	 	
Net (loss) income	  	($	34,468	) 	 	$	13,794	  	  	($	48,262	) 	
Non-cash adjustments to net (loss) income	  	 	71,919	  	 	 	98,622	  	  	 	(28,461	) 	
Cash impact of changes in operating assets and liabilities	  	 	13,345	  	 	 	21,024	  	  	 	(5,921	) 	
 	  	 	 	 	 	 	 	 	  	 	 	 	
Net cash provided by operating activities	  	$	50,796	  	 	$	133,440	  	  	($	82,644	) 	
 	  	 	 	 	 	 	 	 	  	 	 	 	
Six Months Ended June 30, 2013 Compared with the Six Months Ended June 30, 2012
Net cash provided by operating activities decreased by approximately $83 million in the six months ended June 30, 2013 as compared to the prior year period, primarily the result of the overall decrease in revenue and decline in profitability due to higher spending for non-capitalized research and development costs, MyWay transition costs, costs related to the acquisition of dbMotion and Jardogs including transition costs and the incremental selling, general and administrative expenses of the acquired businesses, and payments related to site consolidation costs. In addition, during the second fiscal quarter of 2013 we funded the prepayment of certain compensation costs related to the acquisition of dbMotion.
 
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Investing Cash Flow Activities

 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	$ Change	 	
Capital expenditures	  	($	45,650	) 	 	($	38,732	) 	 	($	6,918	) 	
Capitalized software	  	 	(19,516	) 	 	 	(26,936	) 	 	 	7,420	  	
Cash paid for business acquisitions, net of cash acquired	  	 	(148,875	) 	 	 	0	  	 	 	(148,875	) 	
Sales and maturities of other investments	  	 	12,844	  	 	 	41	  	 	 	12,803	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Net cash used in investing activities	  	($	201,197	) 	 	($	65,627	) 	 	($	135,570	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Six Months Ended June 30, 2013 Compared with the Six Months Ended June 30, 2012
Net cash used in investing activities increased during the six months ended June 30, 2013 due to the payment of $139 million of cash consideration for the acquisition of dbMotion and $24 million of cash consideration for the acquisition of Jardogs, less $14 million of cash acquired from dbMotion, and increased capital expenditures for information technology systems and remote hosting infrastructure. These increases were partially offset by the receipt of approximately $12.5 million in proceeds from the sale of our investment in Humedica in January 2013, as well as a decline in spending for capitalized software. Additional proceeds of approximately $2 million from the Humedica sale remain held in escrow and are expected to be released to us over the two-year period following the sale if not otherwise used for contingencies.
Financing Cash Flow Activities

 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	$ Change	 	
Proceeds from issuance 1.25% senior cash convertible notes, net of issuance costs	  	$	337,237	  	 	$	0	  	 	$	337,237	  	
Purchase call option related to 1.25% senior cash convertible notes	  	 	(82,800	) 	 	 	0	  	 	 	(82,800	) 	
Proceeds from issuance of warrants	  	 	51,233	  	 	 	0	  	 	 	51,233	  	
Proceeds from issuance of common stock	  	 	9,264	  	 	 	3,862	  	 	 	5,402	  	
Excess tax benefits from stock-based compensation	  	 	2,493	  	 	 	101	  	 	 	2,392	  	
Taxes paid related to net share settlement of equity awards	  	 	(6,660	) 	 	 	(3,621	) 	 	 	(3,039	) 	
Payments of capital lease obligations	  	 	(300	) 	 	 	(431	) 	 	 	131	  	
Payments of acquisition financing obligations	  	 	(29,671	) 	 	 	0	  	 	 	(29,671	) 	
Credit facility payments	  	 	(571,467	) 	 	 	(204,045	) 	 	 	(367,422	) 	
Credit facility borrowings, net of issuance costs	  	 	410,983	  	 	 	324,185	  	 	 	86,798	  	
Repurchase of common stock	  	 	0	  	 	 	(225,961	) 	 	 	225,961	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Net cash provided by (used in) financing activities	  	$	120,312	  	 	($	105,910	) 	 	$	226,222	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Six Months Ended June30, 2013 Compared with the Six Months Ended June 30, 2012
Net cash provided by financing activities increased during the six months ended June 30, 2013 due primarily to the absence of any common stock repurchase activity during the first half of 2013. The net proceeds from the issuance of the 1.25% Notes during the second quarter of 2013, including the related cash flows from the purchase of the call option and the issuance of warrants, were substantially all used to fund the net reduction in our credit facility borrowings as well as the funding of our acquisition financing obligations arising from the purchase of dbMotion.
 
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Free Cash Flow
To supplement our statements of cash flows presented on a GAAP basis, we use a non-GAAP measure of free cash flow which we believe is also useful as one of the bases for evaluating our performance. We believe free cash flow is an important liquidity metric, as it measures the amount of cash generated that is available to repay our current debt obligations, make investments, fund acquisitions, repurchase our common stock and for certain other activities. The presentation of non-GAAP free cash flow is not meant to be considered in isolation and should not be considered a substitute for income from operations, net income, net cash provided by operating activities or any other measure determined in accordance with GAAP. Operating asset and liability balances can fluctuate significantly from period to period and there can be no assurance that free cash flow will not be negatively impacted by material changes in operating assets and liabilities in future periods, since these changes depend upon, among other things, management’s timing of payments and cash receipts. In addition to fluctuations resulting from changes in operating assets and liabilities, free cash flow can vary significantly from period to period depending upon, among other things, operating efficiencies, increases or decreases in capital expenditures and capitalized software, and other factors.
We calculate free cash flow as follows:

 	  	Six Months Ended June 30,	 	
(In thousands)	  	2013	 	 	2012	 	 	$ Change	 	
Net cash provided by operating activities	  	$	50,796	  	 	$	133,440	  	 	($	82,644	) 	
Capital expenditures	  	 	(45,650	) 	 	 	(38,732	) 	 	 	(6,918	) 	
Capitalized software	  	 	(19,516	) 	 	 	(26,936	) 	 	 	7,420	  	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Free cash flow	  	($	14,370	) 	 	$	67,772	  	 	($	82,142	) 	
 	  	 	 	 	 	 	 	 	 	 	 	 	
Amounts for each element of the table above are as reported in our consolidated statements of cash flows presented in accordance with GAAP. Refer to the discussion of operating cash flow activities above for the primary factors impacting the decline in free cash flow for the six months ended June 30, 2013.
 
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Future Capital Requirements
The following table summarizes our future payments under the 1.25% Notes and our senior secured credit facilities as June 30, 2013:

 	 	 	 	 	Remainder of	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
(Dollar amounts in thousands)	 	Total	 	 	2013	 	 	2014	 	 	2015	 	 	2016	 	 	2017	 	 	2018	 	 	Thereafter	 	
Principal payments:	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
1.25% Cash Convertible Senior Notes (1)	 	$	345,000	  	 	$	0	  	 	$	0	  	 	$	0	  	 	$	0	  	 	$	0	  	 	$	0	  	 	$	345,000	  	
Senior Secured Credit Facilities	 	 	285,000	  	 	 	5,625	  	 	 	16,875	  	 	 	28,125	  	 	 	39,375	  	 	 	50,625	  	 	 	144,375	  	 	 	0	  	
 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total principal payments	 	 	630,000	  	 	 	5,625	  	 	 	16,875	  	 	 	28,125	  	 	 	39,375	  	 	 	50,625	  	 	 	144,375	  	 	 	345,000	  	
 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Interest payments:	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
1.25% Cash Convertible Senior Notes (1)	 	 	30,190	  	 	 	0	  	 	 	4,313	  	 	 	4,313	  	 	 	4,313	  	 	 	4,313	  	 	 	4,313	  	 	 	8,625	  	
Senior Secured Credit Facilities (2)	 	 	35,162	  	 	 	4,617	  	 	 	8,456	  	 	 	7,473	  	 	 	6,682	  	 	 	5,616	  	 	 	2,318	  	 	 	0	  	
 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total interest payments	 	 	65,352	  	 	 	4,617	  	 	 	12,769	  	 	 	11,786	  	 	 	10,995	  	 	 	9,929	  	 	 	6,631	  	 	 	8,625	  	
 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	 	
Total future debt payments	 	$	695,352	  	 	$	10,242	  	 	$	29,644	  	 	$	39,911	  	 	$	50,370	  	 	$	60,554	  	 	$	151,006	  	 	$	353,625	  	

(1)	Assumes no cash conversions of the 1.25% Notes prior to their maturity on July 1, 2020.	
(2)	Assumes LIBOR plus the applicable margin remain constant at the rate in effect on June 30, 2013, which was 2.45%. Also includes the effect of the floating-to-fixed interest rate swap through its expiration on October 31, 2014.	
1.25% Cash Convertible Senior Notes due 2020
On June 18, 2013, we issued $345.0 million aggregate principal amount of 1.25% Cash Convertible Senior Notes due 2020 (the 1.25% Notes). The aggregate net proceeds of the 1.25% Notes were $305.1 million, after payment of the net cost of the Call Spread Overlay described below and transaction costs, including approximately $0.6 million of accrued professional fees at June 30, 2013. Additionally, we used $300 million of the net proceeds to repay a portion of the outstanding indebtedness under the senior secured credit facilities.
Interest on the 1.25% Notes is payable semiannually in arrears on January 1 and July 1 of each year, at a rate of 1.25% per annum commencing on January 1, 2014. The 1.25% Notes will mature on January 1, 2020 unless repurchased or converted in accordance with their terms prior to such date.
The 1.25% Notes are convertible only into cash, and not into shares of our common stock or any other securities. Holders may convert their 1.25% Notes solely into cash at their option at any time prior to the close of business on the business day immediately preceding January 1, 2020 only under the following circumstances: (1) during any calendar quarter commencing after the calendar quarter ending on September 30, 2013 (and only during such calendar quarter), if the last reported sale price of the common stock for at least 20 trading days (whether or not consecutive) during a period of 30 consecutive trading days ending on the last trading day of the immediately preceding calendar quarter is greater than or equal to 130% of the conversion price on each applicable trading day; (2) during the five business day period immediately after any five consecutive trading day period in which the trading price per $1,000 principal amount of 1.25% Notes for each trading day of the measurement period was less than 98% of the product of the last reported sale price of our common stock and the conversion rate on each such trading day; or (3) upon the occurrence of specified corporate events. On or after January 1, 2020 until the close of business on the second scheduled trading day immediately preceding the maturity date, holders may convert their 1.25% Notes solely into cash at any time, regardless of the foregoing circumstances. Upon conversion, in lieu of receiving shares of our common stock, a holder will receive an amount in cash, per $1,000 principal amount of 1.25% Notes, equal to the settlement amount, determined in the manner set forth in the indenture for the 1.25% Notes.
The initial conversion rate will be 58.1869 shares of our common stock per $1,000 principal amount of 1.25% Notes (equivalent to an initial conversion price of approximately $17.19 per share of common stock). The conversion rate will be subject to adjustment in some events but will not be adjusted for any accrued and unpaid interest. In addition, following certain corporate events that occur prior to the maturity date, we will pay a cash make-whole premium by increasing the conversion rate for a holder who elects to convert such holder’s 1.25% Notes in connection with such a corporate event in certain circumstances. We may not redeem the 1.25% Notes prior to the maturity date, and no sinking fund is provided for the 1.25% Notes.
If we undergo a fundamental change (as defined in the indenture for the 1.25% Notes), holders may require us to repurchase for cash all or part of their 1.25% Notes at a repurchase price equal to 100% of the principal amount of the 1.25% Notes to be repurchased, plus accrued and unpaid interest to, but excluding, the fundamental change repurchase date. The indenture provides for customary events of default, including cross acceleration to certain other indebtedness of ours, and our subsidiaries.
The 1.25% Notes are senior unsecured obligations, and rank senior in right of payment to any of our indebtedness that is expressly subordinated in right of payment to the 1.25% Notes; equal in right of payment to any of our unsecured indebtedness that is not so subordinated; effectively junior in right of payment to any of our secured indebtedness to the extent of the value of the assets securing such indebtedness; and structurally junior to all indebtedness and other liabilities (including trade payables) of our subsidiaries.
The 1.25% Notes contain an embedded cash conversion option. We have determined that the embedded cash conversion option is a derivative financial instrument, required to be separated from the 1.25% Notes and accounted for separately as a derivative liability, with changes in fair value reported in our consolidated statements of income until the cash conversion option transaction settles or expires. The initial fair value liability of the embedded cash conversion option was $82.8 million, which simultaneously reduced the carrying value of the 1.25% Notes (effectively an original issuance discount). For further discussion of the derivative financial instruments relating to the 1.25% Notes, refer to Note 9, “Derivative Financial Instruments,” of the Notes to Consolidated Financial Statements in Part I, Item 1 of this report.
As noted above, the reduced carrying value on the 1.25% Notes resulted in a debt discount that is amortized to the 1.25% Notes’ principal amount through the recognition of non-cash interest expense over the expected life of the debt. This has resulted in our recognition of interest expense on the 1.25% Notes at an effective rate approximating what we would have incurred had nonconvertible debt with otherwise similar terms been issued. The effective
 
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interest rate of the 1.25% Notes is 5.4%, which is imputed based on the amortization of the fair value of the embedded cash conversion option over the remaining term of the 1.25% Notes. As of June 30, 2013, we expect the 1.25% Notes to be outstanding until their July 1, 2020 maturity date, for a remaining amortization period of seven years. The 1.25% Notes’ if-converted value did not exceed their principal amount as of June 30, 2013.
Also in connection with the settlement of the 1.25% Notes, we paid approximately $8.4 million in transaction costs. Such costs have been allocated to the 1.25% Notes, the 1.25% Call Option (defined below) and the 1.25% Warrants (defined below). The amount allocated to the 1.25% Notes, or $8.3 million, was capitalized and will be amortized over the term of the 1.25% Notes. The remaining aggregate amounts allocated to the 1.25% Call Option and 1.25% Warrants were not significant.
1.25% Notes Call Spread Overlay
Concurrent with the issuance of the 1.25% Notes, we entered into privately negotiated hedge transactions (collectively, the 1.25% Call Option) and warrant transactions (collectively, the 1.25% Warrants), with certain of the initial purchasers of the 1.25% Notes (collectively, the Call Spread Overlay). Assuming full performance by the counterparties, the Call Option is intended to offset cash payments in excess of the principal amount due upon any conversion of the 1.25% Notes. We used $82.8 million of the proceeds from the settlement of the 1.25% Notes to pay for the 1.25% Call Option, and simultaneously received $51.2 million for the sale of the 1.25% Warrants, for a net cash outlay of $31.6 million for the Call Spread Overlay. The 1.25% Call Option is a derivative financial instruments and is discussed further in Note 9, “Derivative Financial Instruments,” of the Notes to Consolidated Financial Statements. The 1.25% Warrants are equity instruments and are further discussed in Note 4, “Stockholders’ Equity,” of the Notes to Consolidated Financial Statements.
Aside from the initial payment of a premium to the counterparties of $82.8 million for the 1.25% Call Option, we will not be required to make any cash payments to the counterparties under the 1.25% Call Option, and will be entitled to receive from the counterparties an amount of cash, generally equal to the amount by which the market price per share of common stock exceeds the strike price of the 1.25% Call Options during the relevant valuation period. The strike price under the 1.25% Call Option is initially equal to the conversion price of the 1.25% Notes. Additionally, if the market value per share of our common stock exceeds the strike price of the 1.25% Warrants on any trading day during the 70 trading day measurement period under the 1.25% Warrants, we will, for each such trading day, be obligated to issue to the counterparties a number of shares equal in value to the product of the amount by which such market value exceeds such strike price and 1/70th of the aggregate number of shares of our common stock underlying the 1.25% Warrants transactions, subject to a share delivery cap. We will not receive any additional proceeds if the 1.25% Warrants are exercised. Pursuant to the 1.25% Warrants transactions, we issued 20,074,481 warrants with a strike price of $23.1350 per share. The number of warrants and the strike price are subject to adjustment under certain circumstances.
Credit Facility
On June 28, 2013, we entered into a Credit Agreement (the “2013 Credit Agreement”) with a syndicate of financial institutions. The 2013 Credit Agreement provides for a $225 million senior secured term loan (the “Term Loan”) and a $425 million senior secured revolving facility (the “Revolving Facility”), each with a five year term. The Term Loan is repayable in quarterly installments commencing on September 30, 2013. A total of up to $50 million of the Revolving Facility is available for the issuance of letters of credit, up to $10 million of the Revolving Facility is available for swingline loans, and up to $100 million of the Revolving Facility could be borrowed under certain foreign currencies. On June 28, 2013, we borrowed $60 million under the Revolving Facility in connection with our entry into the 2013 Credit Agreement.
The proceeds of the Term Loan were used to repay the existing debt under the prior credit agreement, and to pay fees and expenses in connection with the refinancing. In conjunction with the closing of the 2013 Credit Agreement, we used a portion of the proceeds from the borrowings under the Revolving Facility to refinance the seller notes and deferred purchase price obligations incurred in connection with our acquisition of dbMotion. The proceeds of the Revolving Facility can be used to finance our working capital needs and for general corporate purposes, including, without limitation, financing of permitted acquisitions, and for share repurchases. We are also permitted to add one or more incremental revolving and/or term loan facilities in an aggregate amount of up to $250 million, subject to certain conditions.
Borrowings under the new senior secured credit facilities will bear interest, at our option (except with respect to foreign currency loans), at a rate per annum equal to either (1) the rate (adjusted for statutory reserve requirements for eurocurrency liabilities and mandatory costs, if any) for deposits in the applicable currency for a period equal to one, two, three or six months or, with respect to loans under the Revolving Facility denominated in United States dollars, subject to availability to all affected lenders, 7 or 14 days (as selected by the Company), appearing on pages LIBOR01 or LIBOR02 or other page displaying such rate for such currency of the Reuters Screen (the “Eurocurrency Rate”) plus the applicable margin or (2) the highest of (a) the rate of interest publicly announced by JPMorgan Chase Bank, N.A. as its prime rate in effect at its principal office in New York City, (b) the federal funds effective rate from time to time plus 0.5%, and (c) the Eurocurrency Rate for United States dollars for a one month interest period plus 1.0%, plus, in each case, the applicable margin. Foreign currency loans will bear interest according to clause (1) above with certain adjustments and fees applicable to fronted foreign currency loans. The applicable margin for borrowings under our new senior secured credit facilities will initially be 1.25% for all loans except for loans based on the Eurocurrency Rate, for which the applicable margin will initially be 2.25%.
Subject to certain agreed upon exceptions, all obligations under the Company’s new senior secured credit facilities will be guaranteed by each of our existing and future direct and indirect material domestic subsidiaries, other than Coniston Exchange LLC and any domestic subsidiary owned by one of our foreign subsidiaries, including dbMotion. (the “Guarantors”) pursuant to a related Guarantee and Collateral Agreement, dated as of June 28, 2013 (the “Guarantee and Collateral Agreement”), among the Company, Allscripts Healthcare, LLC and certain other subsidiaries party thereto, and JPMorgan Chase Bank, N.A., as administrative agent.
The obligations of the Company and each Guarantor under our new senior secured credit facilities, any swap agreements and any cash management arrangements provided by any lender, will be secured, subject to permitted liens and other agreed upon exceptions, by a perfected first priority security interest in all of the tangible and intangible assets (including, without limitation, intellectual property, material owned real property and all of the capital stock of each Guarantor and, in the case of foreign subsidiaries, up to 65% of the capital stock of first tier material foreign subsidiaries) of the Company and the Guarantors.
Our new senior secured credit facilities require us to maintain a minimum interest coverage ratio of 4.0 to 1.0, a maximum total leverage ratio of 4.0 to 1.0 and a maximum senior secured leverage ratio of 3.0 to 1.0. The total leverage ratio is calculated by dividing total indebtedness by earnings before interest expense, income tax expense, depreciation and amortization expense, subject to various agreed upon adjustments. The senior secured leverage ratio
 
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is calculated by dividing senior secured indebtedness by earnings before interest expense, income tax expense, depreciation and amortization expense, subject to various agreed upon adjustments. The minimum interest coverage ratio is calculated by dividing earnings before interest expense, income tax expense, depreciation and amortization expense by cash interest expense, subject to various agreed upon adjustments. In addition, the 2013 Credit Agreement requires mandatory prepayments of the debt outstanding under the facilities in certain specific circumstances, and contains a number of covenants which, among other things, restrict our ability to incur additional indebtedness, engage in mergers, or declare dividends or other payments in respect of our capital stock.
Our new senior secured credit facilities also contain certain customary events of default, including relating to non-payment, breach of covenants, cross-default, bankruptcy and change of control.
As of June 30, 2013, $225 million in term loans, $60 million under the revolving credit facility, and $1.2 million in letters of credit were outstanding under the 2013 Credit Agreement. As of June 30, 2013, the interest rate on the senior secured credit facilities was LIBOR plus 2.25%, which totaled 2.45%. Refer to Note 10 for a discussion of our interest rate swap agreement. There was no default under the 2013 Credit Agreement as of June 30, 2013. Unamortized deferred debt issuance costs totaled $12.6 million, and are included within prepaid expenses and other current assets and other assets on the consolidated balance sheet at June 30, 2013.
As of June 30, 2013, we had $363.8 million available, net of outstanding letters of credit, under our revolving credit facility. There can be no assurance that we will be able to draw on the full available balance of our 2013 Credit Agreement if the financial institutions that have extended such credit commitments become unwilling or unable to fund such borrowings.
Other Matters Affecting Future Capital Requirements
We are currently in the third year of a ten year agreement with Xerox Consultant Services (Xerox) to provide services to support our remote hosting services for our Sunrise acute care clients. We maintain all customer relationships and domain expertise with respect to the hosted applications. The agreement encompasses our payment to Xerox for current Allscripts’ employees to be retained by Xerox from our hosting staff, new remote hosting staff and technology infrastructure, as well as other data center and hosting services, in the amount of approximately $50 million per year. During the six months ended June 30, 2013, we incurred $25 million of expense under this agreement.
In April 2011, our Board of Directors approved a stock repurchase program under which we may purchase up to $200 million of our common stock over three years expiring on May 9, 2014 or such earlier time that the total dollar amount authorized by these resolutions has been used. In April 2012, our Board of Directors approved the repurchase of an additional $200 million bringing the total repurchase authorization to $400 million. Any share repurchases may be made through open market transactions, block trades, privately negotiated transactions (including accelerated share repurchase transactions) or other means. Any repurchase activity will depend on factors such as our working capital needs, cash requirements for investments, debt repayment obligations, our stock price, and economic and market conditions. Our stock repurchase program may be accelerated, suspended, delayed or discontinued at any time. Refer to “Unregistered Sales of Equity Securities, Use of Proceeds and Issuer Purchases of Equity Securities” in Part II, Item 2 of this report for additional information regarding our stock repurchase program. There were no shares repurchased under the program during the six months ended June 30, 2013.
We currently plan to invest over $200 million in research and development efforts during 2013 to improve performance and accelerate product integration and innovation. Our total spending consists of research and development costs directly recorded to expense and also includes capitalized software development costs. To supplement our statement of operations, the table below presents a non-GAAP measure of research and development-related expenses that we believe is a useful metric for evaluating how we are investing in innovation.

 	  	Six Months	 	
 	  	Ended	 	
(Dollar amounts in thousands)	  	June 30,
2013	 	
Research and development costs directly recorded to expense	  	$	102,800	  	
Capitalized software development costs	  	 	19,516	  	
Total non-GAAP R&D-related expense	  	$	122,316	  	
 	  	 	 	 	
Total revenue	  	$	691,893	  	
 	  	 	 	 	
Total expense as a % of total revenue	  	 	18	% 	
Our capital spending during 2013 is expected to be similar to our level of spending in 2012 as we improve our information systems infrastructure, acquire computer equipment and software to accommodate data management and hosting related to our SaaS and hosting solutions, and expand or make leasehold improvements at certain facilities.
In connection with the MyWay Transition, we expect to incur additional non-recurring period costs in future quarters to upgrade the MyWay clients that elect to upgrade. The incremental period costs will be partially offset by cost savings we expect to realize through lower development and support costs. The amount of such costs and anticipated savings are not determinable at this time and will ultimately be based on the number of clients electing to migrate. During first half of 2013 we incurred approximately $13 million in costs associated with the MyWay Transition.
In connection with the Site Consolidation Plan, we incurred employee severance costs of approximately $12 million during the six months ended June 30, 2013. Additional estimated costs yet to be incurred in connection with the Site Consolidation Plan include lease exit costs totaling approximately $1.5 million. We expect to complete the actions and incur all remaining costs by the end of 2014.

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In connection with acquisition of dbMotion on March 4, 2013, consideration given consisted of (a) cash paid at closing of approximately $139 million, (b) 3,823,453 shares of Allscripts common stock, par value $0.01 per share, payable at closing and having a value of approximately $48 million, (c) approximately $23 million in deferred cash consideration payable on the 18-month anniversary of the closing, and (d) approximately $7 million in deferred cash consideration payable in the form of a subordinated promissory note having a maturity of 18 months. On March 5, 2013, we borrowed $130 million to fund the cash component of the consideration under our senior secured revolving credit facility. On June 28, 2013, the liability for the deferred cash consideration payable was funded by placing the funds with an escrow agent, and the subordinated promissory note was paid off. Both the deferred cash consideration and subordinated promissory note had accrued interest at a 10% annual rate. These transactions were funded using proceeds from the initial draw down on our new revolving credit facility.
We believe that our cash, cash equivalents and marketable securities of $73 million as of June 30, 2013, our future cash flows, and our borrowing capacity under our 2013 Credit Agreement, taken together, provide adequate resources to fund ongoing cash requirements for the next twelve months. We cannot provide assurance that our actual cash requirements will not be greater than we expect as of the date of this report. We will, from time to time, consider the acquisition of, or investment in, complementary businesses, products, services and technologies, and the purchase of our common stock under our stock repurchase program which might impact our liquidity requirements or cause us to issue additional equity or debt securities.
If sources of liquidity are not available or if we cannot generate sufficient cash flow from operations during the next twelve months, we might be required to obtain additional sources of funds through additional operating improvements, capital market transactions, asset sales or financing from third parties, a combination thereof or otherwise. We cannot provide assurance that these additional sources of funds will be available or, if available, would have reasonable terms.
Contractual Obligations, Commitments and Off Balance Sheet Arrangements
We have various contractual obligations, which are recorded as liabilities in our consolidated financial statements. Other items, such as operating lease contract obligations, are not recognized as liabilities in our consolidated financial statements but are required to be disclosed.
With the exception of the issuance of the 1.25% Notes and the amounts borrowed under our 2013 Credit Agreement described above under Future Capital Requirements, there were no material changes, outside of the ordinary course of business, to our contractual obligations and other related matters previously disclosed in our Annual Report on Form 10-K/A for the year ended December 31, 2012.
Recent Accounting Pronouncements
For information with respect to recent accounting pronouncements and the impact of these pronouncements on our consolidated financial statements, see Note 1 of the Notes to Consolidated Financial Statements in Part I, Item 1 of this report.
 
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Safe Harbor for Forward-Looking Statements
This report contains forward-looking statements within the meaning of the federal securities laws that involve risks and uncertainties. We develop forward-looking statements by combining currently available information with our beliefs and assumptions. These statements relate to future events, including our future performance, and management’s expectations, beliefs, intentions, plans or projections relating to the future and some of these statements can be identified by the use of forward-looking terminology such as “believes,” “expects,” “anticipates,” “estimates,” “projects,” “intends,” “seeks,” “future,” “continue,” “contemplate,” “would,” “will,” “may,” “should,” and the negative or other variations of those terms or comparable terminology or by discussion of strategy, plans, opportunities or intentions. As a result, actual results, performance or achievements may vary materially from those anticipated by the forward-looking statements.
Among the factors that could cause actual results, performance or achievements to differ materially from those indicated by such forward-looking statements are:
 
•	 	the possibility that our current initiatives focused on product delivery, client experience, streamlining our cost structure, and financial performance may not be successful, which could result in declining demand for our products and services, including attrition among our existing customer base;	
 
•	 	the impact of the realignment of our sales and services organization;	
 
•	 	potential difficulties or delays in achieving platform and product integration and the connection and movement of data among hospitals, physicians, patients and others;	
 
•	 	the risks that we will not achieve the strategic benefits of the merger (the “Eclipsys Merger”) with Eclipsys Corporation (Eclipsys) or our acquisition of dbMotion, Ltd. (dbMotion), or that the Allscripts products will not be integrated successfully with the Eclipsys and dbMotion products;	
 
•	 	competition within the industries in which we operate, including the risk that existing clients will switch to products of competitors;	
 
•	 	failure to maintain interoperability certification pursuant to the Health Information Technology for Economic and Clinical Health Act, with resulting increases in development and other costs for us and possibly putting us at a competitive disadvantage in the marketplace;	
 
•	 	the volume and timing of systems sales and installations, the length of sales cycles and the installation process and the possibility that our products will not achieve or sustain market acceptance;	
 
•	 	the timing, cost and success or failure of new product and service introductions, development and product upgrade releases;	
 
•	 	we may incur costs or customer losses relating to the standardization of our small office electronic health record and practice management systems that could adversely affect our results of operations;	
 
•	 	competitive pressures including product offerings, pricing and promotional activities;	
 
•	 	our ability to establish and maintain strategic relationships;	
 
•	 	errors or similar problems in our software products or other product quality issues;	
 
•	 	the outcome of any legal proceeding that has been or may be instituted against us and others;	
 
•	 	compliance obligations under new and existing laws, regulations and industry initiatives, including new regulations relating to HIPAA/HITECH, increasing enforcement activity in respect of anti-bribery, fraud and abuse, privacy, and similar laws, and future changes in laws or regulations in the healthcare industry, including possible regulation of our software by the U.S. Food and Drug Administration;	
 
•	 	the possibility of product-related liabilities;	
 
•	 	our ability to attract and retain qualified personnel;	
 
•	 	the continued implementation and ongoing acceptance of the electronic record provisions of the American Recovery and Reinvestment Act of 2009, as well as elements of the Patient Protection and Affordable Care Act (aka health reform) which pertain to healthcare IT adoption, including uncertainty related to changes in reimbursement methodology and the shift to pay-for-outcomes;	
 
•	 	maintaining our intellectual property rights and litigation involving intellectual property rights;	
 
•	 	legislative, regulatory and economic developments;	
 
•	 	risks related to third-party suppliers and our ability to obtain, use or successfully integrate third-party licensed technology;	
 
•	 	breach of data security by third parties and unauthorized access to patient health information by third parties resulting in enforcement actions, fines and other litigation; and	
 
•	 	those factors discussed in “Risk Factors” in our periodic filings with the Securities and Exchange Commission (the “SEC”).	
We make these statements under the protection afforded by Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended. Because forward-looking statements are subject to assumptions and uncertainties, actual results, performance or achievements may differ materially from those expressed or implied by such forward-looking statements. Stockholders are cautioned not to place undue reliance on such statements, which speak only as of the date such statements are made. Except to the extent required by applicable law or regulation, Allscripts undertakes no obligation to revise or update any forward-looking statement, or to make any other forward-looking statements, whether as a result of new information, future events or otherwise.
 
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Item 3.	Quantitative and Qualitative Disclosures About Market Risk	
During the six months ended June 30, 2013, there were no significant changes to our quantitative and qualitative disclosures about market risk. Please refer to Part II, Item 7A. Quantitative and Qualitative Disclosures about Market Risk included in our Annual Report on Form 10-K/A for our fiscal year ended December 31, 2012 for a more complete discussion of the market risks we encounter.
 
Item 4.	Controls and Procedures	
Evaluation of disclosure controls and procedures
As of June 30, 2013, our management, including our Chief Executive Officer and Chief Financial Officer, have reviewed and evaluated the effectiveness of our disclosure controls and procedures pursuant to Exchange Act Rule 13a-15(b). Based on their review and evaluation, the Chief Executive Officer and Chief Financial Officer have concluded that our disclosure controls and procedures are effective.
Changes in Internal Control over Financial Reporting
There has been no change in our internal control over financial reporting during the quarter ended June 30, 2013 that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting.
 
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PART II OTHER INFORMATION
 
Item 1.	Legal Proceedings	
We hereby incorporate by reference Note 10, “Contingencies,” of the Notes to Consolidated Financial Statements in Part I, Item 1 of this report.
 
Item 1A.	Risk Factors	
Our Annual Report on Form 10-K/A for the year ended December 31, 2012 includes a detailed discussion of certain material risk factors facing us. The information presented below describes additions to such risk factors and should be read in conjunction with the risk factors and information disclosed in our Annual Report on Form 10-K/A.
The accounting for the 1.25% Notes will result in our having to recognize interest expense significantly greater than the stated interest rate of the notes and may result in volatility to our Consolidated Statements of Operations.
We will settle any conversions of the 1.25% Notes entirely in cash. Accordingly, the conversion option that is part of the 1.25% Notes will be accounted for as a derivative pursuant to accounting standards relating to derivative instruments and hedging activities. Refer to Note 9, “Derivative Financial Instruments,” of the Notes to Consolidated Financial Statements in Part I, Item 1 of this report. In general, this resulted in an initial valuation of the conversion option, which is bifurcated from the debt component of the 1.25% Notes, resulting in an original issue discount. The original issue discount will be accreted to interest expense over the term of the 1.25% Notes, which will result in an effective interest rate reported in our Consolidated Statements of Operations significantly in excess of the stated coupon rate of the 1.25% Notes. This accounting treatment will reduce our earnings and could adversely affect the price at which our common stock trades, but it will not affect the amount of cash interest paid to holders of the 1.25% Notes or our cash flows.
For each financial statement period after issuance of the 1.25% Notes, a hedge gain (or loss) will be reported in our Consolidated Statements of Operations to the extent the valuation of the conversion option changes from the previous period. The 1.25% Call Option will also be accounted for as a derivative instrument, offsetting the gain (or loss) associated with changes to the valuation of the conversion option. Although we do not expect there to be a material net impact to our Consolidated Statements of Operations as a result of our issuing the 1.25% Notes and entering into the 1.25% Call Option, we cannot assure you that these transactions will be completely offset, which may result in volatility to our Consolidated Statements of Operations.
Provisions in the indenture for the 1.25% Notes may deter or prevent a business combination.
If a fundamental change occurs prior to the maturity date of the 1.25% Notes, holders of the 1.25% Notes will have the right, at their option, to require us to repurchase all or a portion of their 1.25% Notes. In addition, following certain corporate events that occur prior to the maturity date of the 1.25% Notes, we will pay a cash make-whole premium by increasing the conversion rate for a holder who elects to convert. In addition, the indenture for the 1.25% Notes prohibits us from engaging in certain mergers or acquisitions unless, among other things, the surviving entity assumes our obligations under the 1.25% Notes. These and other provisions could prevent or deter a third party from acquiring us even where the acquisition could be beneficial to our stockholders.
The convertible note hedge and warrant transactions we entered into in connection with the issuance of our 1.25% Notes issuance may not provide the benefits we anticipate, and may have a dilutive effect on our common stock.
Concurrent with the issuance of the 1.25% Notes, we entered into the 1.25% Call Option with, and issued the 1.25% Warrants to, certain of the initial purchasers of the 1.25% Notes. We entered into the 1.25% Call Option transaction with the expectation that it would offset potential cash payments in excess of the principal amount of the 1.25% Notes upon conversion of the 1.25% Notes. In the event that the hedge counterparties fail to deliver potential cash payments to us, as required under the 1.25% Call Option documents, we would not receive the benefit of such transaction. Separately, we also issued the 1.25% Warrants to the hedge counterparties. The warrant transactions could separately have a dilutive effect to the extent that the market price per share of our common stock, as measured under the terms of the warrant transactions, exceeds the strike price of the 1.25% Warrants.
 
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Item 2.	Unregistered Sales of Equity Securities, Use of Proceeds and Issuer Purchases of Equity Securities	
In June 2013, we agreed to issue a warrant to a commercial partner as part of an overall commercial relationship pursuant to which the warrant holder has the right to purchase 1,500,000 shares of our common stock at a strike price of $12.94 per share. The warrant vests in four equal annual installments of 375,000 shares (beginning in June 2014) and expires in June 2020. The warrant becomes void if certain specified changes to the parties’ commercial relationship occur. The Company’s issuance of the warrant is a private placement exempt from registration pursuant to Section 4(a)(2) under the Securities Act of 1933, as amended.
In April 2011, our Board of Directors approved a stock repurchase program under which we may purchase up to $200 million of our common stock over three years expiring on May 9, 2014 or such earlier time that the total dollar amount authorized by these resolutions has been used. In April 2012, our Board of Directors approved the repurchase of an additional $200 million bringing the total repurchase authorization to $400 million. Any share repurchases may be made through open market transactions, block trades, privately negotiated transactions (including accelerated share repurchase transactions) or other means. Any repurchase activity will depend on factors such as our working capital needs, cash requirements for investments, debt repayment obligations, our stock price, and economic and market conditions. Our stock repurchase program may be accelerated, suspended, delayed or discontinued at any time.
The following table summarizes the stock repurchase activity for the three months ended June 30, 2013 (there is no activity to report for the period) and the approximate dollar value of shares that may yet be purchased pursuant to our stock repurchase program:

(In thousands, except per share amounts)	  	 	 	  	 	 	  	 	 	  	 	 	
 	  	 	 	  	 	 	  	Total Number	 	  	Approximate	 	
 	  	 	 	  	 	 	  	Of Shares	 	  	Dollar Value	 	
 	  	 	 	  	 	 	  	Purchased	 	  	Of Shares	 	
 	  	 	 	  	 	 	  	As Part Of	 	  	That May Yet	 	
 	  	Total	 	  	Average	 	  	Publicly	 	  	Be Purchased	 	
 	  	Number	 	  	Price	 	  	Announced	 	  	Under The	 	
 	  	Of Shares	 	  	Paid Per	 	  	Plans Or	 	  	Plans Or	 	
Period	  	Purchased	 	  	Share	 	  	Programs	 	  	Programs	 	
04/01/13—04/30/13	  	 	0	  	  	$	0.00	  	  	 	0	  	  	$	123,044	  	
05/01/13—05/31/13	  	 	0	  	  	$	0.00	  	  	 	0	  	  	$	123,044	  	
06/01/13—06/30/13	  	 	0	  	  	$	0.00	  	  	 	0	  	  	$	123,044	  	
 	  	 	 	 	  	 	 	 	  	 	 	 	  	 	 	 	
 	  	 	0	  	  	$	0.00	  	  	 	0	  	  	 	 	 	

Item 6.	Exhibits	
(a)    Exhibits
See Index to Exhibits.
 
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SIGNATURES
Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the Registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized, on August 9, 2013.

ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.	
 	 	
By:	 	/s/    Richard J. Poulton	
 	 	Richard J. Poulton	
 	 	Chief Financial Officer	
 	 	(Duly Authorized Officer and	
 	 	Principal Financial Officer)	
Date: August 9, 2013
 
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INDEX TO EXHIBITS

Exhibit
Number	  	  	  	Filed
Herewith	  	Incorporated by Reference	 	
 	  	Exhibit Description	  	 	  	Form	  	Exhibit	  	Filing Date	  	Filed By	 	 	
4.1	  	Indenture dated as of June 18, 2013, between Allscripts Healthcare Solutions, Inc. and Wells Fargo Bank, National Association, as Trustee	  	 	  	8-K	  	4.1	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
4.2	  	Form of 1.25% Cash Convertible Senior Note due 2020 (included in Exhibit 4.1)	  	 	  	8-K	  	4.2	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.1	  	Convertible note hedge transaction confirmation, dated as of June 12, 2013, by and between JPMorgan Chase Bank, National Association, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.1	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.2	  	Amendment to convertible note hedge transaction, dated as of June 14, 2013, by and between JPMorgan Chase Bank, National Association, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.2	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.3	  	Convertible note hedge transaction confirmation, dated as of June 12, 2013, by and between Citibank, N.A. and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.3	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.4	  	Amendment to convertible note hedge transaction, dated as of June 14, 2013, by and between Citibank, N.A., and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.4	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.5	  	Convertible note hedge transaction confirmation, dated as of June 12, 2013, by and between Deutsche Bank AG, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.5	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.6	  	Amendment to convertible note hedge transaction, dated as of June 14, 2013, by and between Deutsche Bank AG, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.6	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.7	  	Warrant transaction confirmation, dated as of June 12, 2013, by and between JPMorgan Chase Bank, National Association, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.7	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.8	  	Warrant transaction confirmation, dated as of June 14, 2013, by and between JPMorgan Chase Bank, National Association, London Branch and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.8	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.9	  	Warrant transaction confirmation, dated as of June 12, 2013, by and between Citibank, N.A., and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.9	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.10	  	Warrant transaction confirmation, dated as of June 14, 2013, by and between Citibank, N.A., and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.10	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.11	  	Warrant transaction confirmation, dated as of June 12, 2013, by and between Deutsche Bank AG, London Branch, and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.11	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.12	  	Warrant transaction confirmation, dated as of June 14, 2013, by and between Deutsche Bank AG, London Branch, and Allscripts Healthcare Solutions, Inc.	  	 	  	8-K	  	10.12	  	June 18, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.13†	  	Allscripts Healthcare Solutions, Inc. Amended and Restated 2011 Stock Incentive Plan	  	 	  	8-K	  	10.1	  	May 24, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.14	  	Credit Agreement, dated as of June 28, 2013, by and among Allscripts Healthcare Solutions, Inc., Allscripts Healthcare, LLC, Citibank, N.A., as syndication agent, KeyBank National Association, SunTrust Bank, Deutsche Bank Securities Inc. and The Bank of Tokyo-Mitsubishi UFJ, Ltd., as co-documentation agents, JPMorgan Chase Bank, N.A., as administrative agent, and the other lenders party thereto.	  	 	  	8-K	  	10.1	  	July 2, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.15	  	Guarantee and Collateral Agreement, dated as of June 28, 2013, by and among Allscripts Healthcare Solutions, Inc., Allscripts Healthcare, LLC and certain other subsidiaries party thereto, and JPMorgan Chase Bank, N.A., as administrative agent	  	 	  	8-K	  	10.2	  	July 2, 2013	  	Allscripts Healthcare Solutions, Inc.	 	 	
 	 	 	 	 	 	 	 	 	
10.16†	  	Amended and Restated Allscripts Healthcare Solutions, Inc. Director Deferred Compensation Plan	  	X	  	 	  	 	  	 	  	 	 	 	
 	 	 	 	 	 	 	 	 	
10.17†	  	Consulting Agreement, dated as of April 15, 2013, between Allscripts Healthcare Solutions, Inc. and Glen E. Tullman	  	X	  	 	  	 	  	 	  	 	 	 	
 	 	 	 	 	 	 	 	 	
31.1	  	Rule 13a—14(a) Certification of Chief Executive Officer	  	X	  	 	  	 	  	 	  	 	 	 	
 	 	 	 	 	 	 	 	 	
31.2	  	Rule 13a—14(a) Certification of Chief Financial Officer	  	X	  	 	  	 	  	 	  	 	 	 	

Table of Contents

32.1	  	Section 1350 Certifications of Chief Executive Officer and Chief Financial Officer	  	    X	  	 	  	 	  	 	  	 	
 	 	 	 	 	 	 	
101	  	Interactive Data Files Pursuant to Rule 405 of Regulation S-T: (i) Consolidated Balance Sheets, (ii) Consolidated Statements of Operations, (iii) Consolidated Statements of Comprehensive Income (Loss), (iv) Consolidated Statements of Cash Flows, and (v) Notes to Consolidated Financial Statements	  	    X	  	 	  	 	  	 	  	 	
 
†	Indicates management contract or compensatory plan.	

Exhibit 10.16
AMENDED AND RESTATED
ALLSCRIPTS HEALTHCARE SOLUTIONS, INC.
DIRECTOR DEFERRED COMPENSATION PLAN
1. Purpose. The purpose of the Allscripts Healthcare Solutions, Inc. Director Deferred Compensation Plan is to provide members of the Board of Directors of Allscripts Healthcare Solutions, Inc. (the “Company”) who are not employees of the Company or its subsidiaries with the opportunity to elect to defer all or a portion of (i) the cash retainer fees otherwise payable to them by the Company into deferred stock units and (ii) the restricted stock units granted to them by the Company.
2. Definitions. For purposes of the Plan:
(a) “Account” means the separate account maintained on the books of the Company for each Participant pursuant to Section 7, consisting of the Cash Retainer Sub-Account and the RSU Sub-Account.
(b) “Board” means the Board of Directors of the Company.
(c) “Committee” means the Compensation Committee of the Board.
(d) “Common Stock” means the common stock of the Company.
(e) “Deferred Stock Units” means deferred stock units credited to a Participant’s Account pursuant to elections by the Participant under Sections 5 and 6.
(f) “Director” means any member of the Board who is not an employee of the Company or any of its subsidiaries.
(g) “Disabled” means a Director is unable to engage in any substantial gainful activity by reason of any medically determinable physical or mental impairment that can be expected to result in death or can be expected to last for a continuous period of not less than 12 months.
(h) “Effective Date” means December 23, 2010.
(i) “Fair Market Value” means as of any date the closing price of the Common Stock as reported on the NASDAQ Global Select Market for that date or, if no closing price is reported for that date, the closing price on the next preceding date for which a closing price is reported, unless otherwise determined by the Committee.
(j) “Participant” means a Director who makes a deferral election under Section 5 or 6 of the Plan.
(k) “Plan” means the Allscripts Healthcare Solutions, Inc. Director Deferred Compensation Plan as set forth herein and as amended from time to time.
(l) “Restricted Stock Units” or “RSUs” means restricted stock units granted to the Participant under the Stock Plan.
(m) “Section 409A” means Section 409A of the Internal Revenue Code of 1986, as amended.

(n) “Stock Plan” means the Allscripts Healthcare Solutions, Inc. 2011 Stock Incentive Plan as amended from time to time.
3. Administration. The Plan shall be administered by the Committee. The Committee shall, subject to the terms of this Plan, interpret this Plan and the application thereof and establish, amend and revoke rules and regulations as it deems necessary or desirable for the administration of the Plan. All such interpretations, rules, regulations and conditions shall be final, binding and conclusive upon the Participants and all other persons having or claiming any right or interest in the Plan or the Deferred Stock Units.
A majority of the Committee shall constitute a quorum. The Committee shall take action either by (i) a majority of the members of the Committee present at any meeting at which a quorum is present or (ii) written approval by all of the members of the Committee without a meeting. The Committee may authorize any one or more of its number or any officer of the Company to execute and deliver documents on behalf of the Committee.
No member of the Board or the Committee, and no officer of the Company to whom the Committee delegates any of its power and authority hereunder, shall be liable for any act, omission ,  interpretation, construction or determination made in connection with this Plan in good faith; and the members of the Board, the Committee and such officers shall be entitled to indemnification and reimbursement by the Company in respect of any claim, loss, damage or expense (including attorneys’ fees) arising therefrom to the full extent permitted by law.
4. Eligibility. Each Director shall be eligible to participate in the Plan and to make the elections provided under Sections 5 and 6.
5. Deferral of Cash Retainer.
(a) Annual Elections. Prior to the first day of each calendar year beginning on or after January 1, 2011, each Director may elect to defer payment of all or a portion of the Director’s cash retainer fees to be earned in such calendar year that will be credited to the Cash Retainer Sub-Account of the Participant’s Account. Any election made under this paragraph shall become irrevocable as of December 31 of the year prior to the year in which the services relating to the cash retainer fee are performed.
(b) Initial Participant Elections. An individual who becomes a Director for the first time after a calendar year has commenced may make a deferral election, not later than the 30th day following the date the individual becomes a Director, with respect to all or a portion of the Director’s annual cash retainer that is earned for calendar quarters that begin after the date of such election that will credited to the Cash Retainer Sub-Account of the Participant’s Account.
(c) Effect of Elections. Any election made pursuant to this Section shall remain in effect for future calendar years unless and until the Participant makes a new election in accordance with Section 5(a). In order to change the amount of a deferral for any subsequent calendar year (or to cease deferrals), a Participant must make a new election prior to the calendar year for which the new election is to be effective.
 
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6. Deferral of Restricted Stock Units.
(a) Annual Elections. Prior to the first day of each calendar year beginning on or after January 1, 2011, each Director may elect, in accordance with rules and procedures established by the Committee, to defer payment of all or a portion of the Restricted Stock Units granted to the Director in such calendar year that will be credited to the RSU Sub-Account of the Participant’s Account. Any election made under this paragraph shall become irrevocable as of December 31 of the year prior to the year in which the RSUs relating to the election are granted.
(b) Initial Participant Elections. An individual who becomes a Director for the first time after a calendar year has commenced may make a deferral election, not later than the earlier of (i) the 30th day following the date the individual becomes a Director and (ii) the day prior to the grant of Restricted Stock Units in such calendar year to the Director, with respect to all or a portion of the RSUs granted to the Director in such calendar year that will credited to the RSU Sub-Account of the Participant’s Account.
(c) Effect of Elections. Any election made pursuant to this Section shall remain in effect for future calendar years unless and until the Participant makes a new election in accordance with Section 6(a). In order to change the number of Restricted Stock Units deferred for any subsequent calendar year (or to cease deferrals), a Participant must make a new election prior to the calendar year for which the new election is to be effective.
7. Account.
(a) Cash Retainers. The crediting of Deferred Stock Units to the Cash Retainer Sub-Account of the Participant’s Account with respect to the deferral of cash retainer fees pursuant to Section 5 shall be made as of the dates the fees earned by the Participant during the applicable calendar year would otherwise have been payable to the Participant. The number of Deferred Stock Units to be credited shall be equal to the result of dividing the amount deferred as of each such date by the Fair Market Value of one share of Common Stock on such date.
(b) Restricted Stock Units. The crediting of Deferred Stock Units to the RSU Sub-Account of the Participant’s Account with respect to the deferral of Restricted Stock Units pursuant to Section 6 shall be made as of the dates the RSUs granted to the Participant during the applicable calendar year become vested. The number of Deferred Stock Units to be credited shall be equal to the number of RSUs that are deferred by the Participant as of such date.
(c) Cash Dividends. Whenever any cash dividends are declared on the Common Stock, the Company will credit the Cash Retainer and RSU Sub-Accounts of the Account of each Participant on the date such dividend is paid with a number of additional Deferred Stock Units equal to the result of dividing (i) the product of (x) the total number of Deferred Stock Units credited to the Participant’s Sub-Account on the record date for such dividend and (y) the per share amount of such dividend by (ii) the Fair Market Value of one share of Common Stock on the date such dividend is paid by the Company to the holders of Common Stock.
(d) Capitalization Adjustments. In the event of (i) any change in the Common Stock through a merger, consolidation, reorganization, recapitalization or otherwise, (ii) a stock dividend, or (iii) a stock split, combination or other changes the Common Stock, all as described in Section 5.7 of the Stock Plan, the Deferred Stock Units credited to the Cash Retainer and RSU Sub-Accounts of the Account of each Participant shall be increased or decreased proportionately in accordance with such Section.
8. Payment of Account. Payment of the Cash Retainer and RSU Sub-Accounts of the Participant’s Account shall be made in a lump sum to the Participant (or, in the event of the Participant’s death, to the Participant’s beneficiary, as provided in Section 10) in shares of Common Stock equal to the number of Deferred Stock Units credited to each Sub-Account (provided that any fractional Deferred Stock Units shall be paid in cash based on the Fair Market Value of one share of Common Stock on the payment date), as provided below.
 
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(a) Cash Retainer Sub-Account. The Cash Retainer Sub-Account shall be paid, as elected by the Participant, on the tenth business day of January of the calendar year following:
(i) The earlier of the fourth anniversary of each date the applicable Deferred Stock Units were credited to the Sub-Account and the Participant’s termination of service as a Director for any reason;
(ii) The later of the fourth anniversary of each date the applicable Deferred Stock Units were credited to the Sub-Account and the Participant’s termination of service as a Director for any reason.
In the absence of an effective election, payment shall be made in accordance with sub-paragraph (ii) above.
(b) RSU Sub-Account. The RSU Sub-Account shall be paid on the tenth business day of January of the calendar year following the calendar year in which the Participant terminates service as a Director for any reason.
(c) Disabled Participant. Notwithstanding the provisions of subsections (a) and (b) of this Section 8, if a Participant is determined to be Disabled, then such Participant’s Account shall be paid on the tenth business day of January of the calendar year following the calendar year in which the Participant is determined to be Disabled. The determination of whether the Participant is Disabled shall be made by the Committee (excluding any member of the Committee who is the subject of such determination), which, in its discretion, may engage or consult a licensed practicing physician or other party as it deems appropriate.
9. Change of Control. In the event of a Change of Control (as defined in the Stock Plan) that constitutes a change in the ownership or effective control of the Company or in the ownership of a substantial portion of the Company’s assets under Section 409A, the Account of each Participant shall be paid to the Participant in a lump sum in cash within five business days after the date of the Change of Control, in an amount equal to the result of multiplying (i) the number of Deferred Stock Units credited to the Participant’s Account on the Change of Control date by (ii) the Fair Market Value of one share of Common Stock on the Change of Control date.
10. Beneficiary Designation. Each Participant shall have the right, at any time, to designate any person or persons as his beneficiary or beneficiaries to whom payment under the Plan shall be paid in the event of his or her death prior to payment to the Participant of his or her Account. Any beneficiary designation may be made or changed by a Participant by a written instrument, in such form prescribed by the Committee, which is filed with the Company prior to the Participant’s death. If a Participant fails to designate a beneficiary, or if all designated beneficiaries predecease the Participant, the Account shall be paid to the Participant’s estate.
11. Amendment and Termination. The Board may amend or terminate the Plan at any time in whole or in part; provided, however, that no amendment or termination shall reduce the Deferred Stock Units credited to a Participant’s Account or adversely affect the rights of a Participant to such Deferred Stock Units, without the consent of the Participant (or the Participant’s beneficiary in the event of the Participant’s death). Notwithstanding the foregoing, the Plan may be amended at any time, without the consent of any Participant (or beneficiary) if necessary or desirable to comply with the requirements, or avoid the application, of Section 409A.
 
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12. General Provisions
(a) Unfunded Plan. The Company’s obligation to make payment under the Plan shall be contractual only and all payments hereunder shall be made by the Company from its general assets at the time and in the manner provided for in the Plan. No funds, securities or other property of any nature shall be segregated or earmarked for any current or former Participant, beneficiary or other person, and his or her sole right is as a general creditor of the Company with an unsecured claim against its general assets.
(b) Non-Alienation of Benefits. Neither a Participant nor any other person shall have any rights to sell, assign, transfer, pledge, anticipate, or otherwise encumber the amounts, if any, payable under the Plan to the Participant or any other person. Any attempted sale, assignment, transfer or pledge shall be null and void and without any legal effect. No part of the amounts payable under the Plan shall be subject to seizure or sequestration for the payment of any debts, judgments, alimony or separate maintenance owed by a Participant or any other person, nor be transferable by operation of law in the event of a Participant’s or any other person’s bankruptcy or insolvency.
(c) Section 409A. Notwithstanding any provision of the Plan to the contrary, the Plan will be construed, administered or deemed amended as necessary to comply with the requirements of Section 409A to avoid taxation under section 409A to the extent Section 409A applies to the Plan. The Committee, in its sole discretion shall determine the requirements of Section 409A that are applicable to the Plan and shall interpret the terms of the Plan in a manner consistent therewith. Under no circumstances, however, shall the Company or any affiliate or any of its or their employees, officers, directors, service providers or agents have any liability to any person for any taxes, penalties or interest due on amounts paid or payable under the Plan, including any taxes, penalties or interest imposed under Section 409A.
(d) No Stockholder Rights. Neither the Participant nor any other person shall have any rights as a stockholder of the Company with respect to the Deferred Stock Units credited to the Participant’s Account until the shares of Common Stock are issued to the Participant (or the beneficiary of the Participant).
(e) Severability. If any provision of the Plan shall be held illegal or invalid for any reason, such illegality or invalidity shall not affect the remaining provisions of the Plan, and the Plan shall be enforced as if the invalid provisions had never been set forth therein.
(f) Successors in Interest. The obligation of the Company under the Plan shall be binding upon any successor or successors of the Company, whether by merger, consolidation, sale of assets or otherwise, and for this purpose reference herein to the Company shall be deemed to include any such successor or successors.
(g) Governing Law; Interpretation. The Plan shall be construed and enforced in accordance with, and governed by, the laws of the State of Delaware, without giving effect to principles of conflict of laws.
 
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Exhibit 10.17
CONSULTING AGREEMENT
This Consulting Agreement (this “Agreement”) is entered into as of April 15, 2013 between Allscripts Healthcare Solutions, Inc., a Delaware corporation (the “Company”), and Glen E. Tullman (the “Consultant”).
WHEREAS, the Company desires to maintain continuity of effort on certain sales opportunities for which the Consultant had involvement in while serving as an officer of the Company and the Consultant desires to accept such position, upon the terms and subject to the conditions set forth herein.
NOW, THEREFORE, in consideration of the mutual promises and agreements contained herein, the adequacy and sufficiency of which are hereby acknowledged, the Company and the Consultant hereby agree as follows:
1. Term of Agreement. The Company hereby agrees to retain the Consultant as a consultant, and the Consultant hereby agrees to be retained by the Company, upon the terms and subject to the conditions hereof for the period commencing on April 15, 2013 (the “Effective Date”) and ending on June 30, 2013 (the “Consulting Period”).
2. Consulting Services. During the Consulting Period, the Consultant shall take his direction as a consultant from the Company’s Chief Executive Officer or Chief Financial Officer. The Consultant shall not have any obligation with respect to reporting or the number of hours he spends providing Consulting services under this Agreement. In addition, this Agreement is independent of and shall neither be affected by or affect the terms of any other agreement or contract between the Consultant and the Company. Finally, the Company and the Consultant agree that in no event shall the level of consulting services to be provided by the Consultant pursuant to this Section 2 exceed more than 20% of the average level of services performed by the Consultant for the Company and its affiliated “service recipients” (within the meaning of Treasury regulation §1.409A-1(h)(3)) over the immediately preceding 36-month period.
3. Compensation. As compensation for the consulting services to be performed by the Consultant, the Company shall pay the Consultant a consulting fee at the rate of $75,000 per month. The first month’s payment shall be made upon execution of this Agreement and the remaining months’ payments shall be due and payable on the fifteenth day of each month.
4. Indemnification. During the Consulting Period, the Company shall indemnify and hold the Consultant harmless (including the advancement of attorneys’ fees and costs) from any and all threatened or actual claims and liabilities arising out of the Consultant’s provision of services under this Agreement.
 
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5. Successors and Assigns. This Agreement shall be enforceable by the Consultant and his heirs, executors, administrators and legal representatives, and by the Company and its successors and assigns.
6. Governing Law. This Agreement shall be governed by and construed and enforced in accordance with the internal laws of the State of Illinois without regard to principles of conflict of laws.
7. Termination. Either party may terminate this Agreement for convenience upon 30 days written notice. If terminated by the Consultant, any prepaid compensation will be refunded to the Company on a pro-rata basis for the fraction of the month not worked between payments.
8. Confidentiality. The Consultant agrees that the non-disclosure obligations set forth in Section 5(e) of the Separation Agreement between the parties dated December 19, 2012 (the “Separation Agreement”) shall apply to any Confidential Information (as defined in the Separation Agreement) received by the Consultant during the Consulting Period.
9. Counterparts. This Agreement may be executed in two counterparts, each of which shall be deemed to be an original and both of which together shall constitute one and the same instrument.
IN WITNESS WHEREOF, the parties hereto have executed this Amendment as of the date first written above.

ALLSCRIPTS HEALTHCARE SOLUTONS, INC.	
 	 	
By:	 	/s/ Richard J. Poulton        	
Name:	 	Richard J. Poulton	
Title:	 	Chief Financial Officer	

GLEN E. TULLMAN	
 	
/s/    Glen E. Tullman      	
 
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Exhibit 31.1
Certification
I, Paul M. Black, certify that:
 
1.	I have reviewed this quarterly report on Form 10-Q of Allscripts Healthcare Solutions, Inc.;	
 
2.	Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this report;	
 
3.	Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;	
 
4.	The registrant’s other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f)) for the registrant and have:	
 
 	a.	designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within those entities, particularly during the period in which this report is being prepared;	
 
 	b.	designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principles;	
 
 	c.	evaluated the effectiveness of the registrant’s disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and	
 
 	d.	disclosed in this report any change in the registrant’s internal control over financial reporting that occurred during the registrant’s most recent quarter (the registrant’s fourth quarter in the case of an annual report) that has materially affected, or is reasonably likely to materially affect, the registrant’s internal control over financial reporting;	
 
5.	The registrant’s other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the registrant’s auditors and the audit committee of the registrant’s Board of Directors (or persons performing the equivalent functions):	
 
 	a.	all significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting, which are reasonably likely to adversely affect the registrant’s ability to record, process, summarize and report financial information; and	
 
 	b.	any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant’s internal control over financial reporting.	

Date: August 9, 2013	 	 	 	 	 	/s/ Paul M. Black	
 	 	 	 	 	 	Chief Executive Officer	

Exhibit 31.2
Certification
I, Richard J. Poulton, certify that:
 
1.	I have reviewed this quarterly report on Form 10-Q of Allscripts Healthcare Solutions, Inc.;	
 
2.	Based on my knowledge, this report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by this report;	
 
3.	Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the financial condition, results of operations and cash flows of the registrant as of, and for, the periods presented in this report;	
 
4.	The registrant’s other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and 15d-15(f)) for the registrant and have:	
 
 	a.	designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the registrant, including its consolidated subsidiaries, is made known to us by others within those entities, particularly during the period in which this report is being prepared;	
 
 	b.	designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principles;	
 
 	c.	evaluated the effectiveness of the registrant’s disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and	
 
 	d.	disclosed in this report any change in the registrant’s internal control over financial reporting that occurred during the registrant’s most recent quarter (the registrant’s fourth quarter in the case of an annual report) that has materially affected, or is reasonably likely to materially affect, the registrant’s internal control over financial reporting;	
 
5.	The registrant’s other certifying officer and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the registrant’s auditors and the audit committee of the registrant’s Board of Directors (or persons performing the equivalent functions):	
 
 	a.	all significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting, which are reasonably likely to adversely affect the registrant’s ability to record, process, summarize and report financial information; and	
 
 	b.	any fraud, whether or not material, that involves management or other employees who have a significant role in the registrant’s internal control over financial reporting.	

Date: August 9, 2013	 	 	 	 	 	/s/ Richard J. Poulton	
 	 	 	 	 	 	Chief Financial Officer	

Exhibit 32.1
The following statement is being made to the Securities and Exchange Commission solely for purposes of Section 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. 1350), which carries with it certain criminal penalties in the event of a knowing or willful misrepresentation.
Securities and Exchange Commission
450 Fifth Street, NW
Washington, D.C. 20549
Re: Allscripts Healthcare Solutions, Inc.
Ladies and Gentlemen:
In accordance with the requirements of Section 906 of the Sarbanes-Oxley Act of 2002 (18 USC 1350), each of the undersigned hereby certifies that:
(i) this Quarterly Report on Form 10-Q for the quarter ended June 30, 2013, which this statement accompanies, fully complies with the requirements of section 13(a) or 15(d) of the Securities Exchange Act of 1934 (15 U.S.C. 78m or 78o(d)); and
(ii) the information contained in this quarterly report on Form 10-Q for the quarter ended June 30, 2013, fairly presents, in all material respects, the financial condition and results of operations of Allscripts Healthcare Solutions, Inc.
Dated as of this 9th day of August, 2013.

/S/ PAUL M. BLACK	 	 	 	 	 	/S/ RICHARD J. POULTON	
Paul M. Black
Chief Executive Officer	 	 	 	 	 	Richard J. Poulton
Chief Financial Officer	
A signed original of this written statement required by Section 906 has been provided to Allscripts Healthcare Solutions, Inc. and will be retained by Allscripts Healthcare Solutions, Inc. and furnished to the Securities and Exchange Commission or its staff upon request.